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GENE CARD

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Gene Card

Best human hits

FMR1; FXR1; FXR2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014359

Gene Model ID

KH2012:KH.S363.6

Location

KhS363:17156..24799

Transcript Models and Sequences

  KH2012:KH.S363.6.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000008519
NCBI Reference Sequence XM_009862030.2
Collections

Gateway full ORF

2 results

cima832680

Plate: VES62_C11

cien140493

Plate: VES92_C06

Gene collection 1 (N. Satoh)

1 result

ciad009h17

Plate: R1CiGC01n18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
KH_dom_type_1_sf Gene3D K Homology domain, type 1 superfamily
Agenet-like_dom ProSiteProfiles Agenet-like domain
FXMRP1_C_core Pfam Fragile X-related 1 protein, C-terminal core
KH_dom_type_1 Pfam K Homology domain, type 1
KH_dom SMART K Homology domain
KH_dom_type_1_sf SUPERFAMILY K Homology domain, type 1 superfamily

GOSlim

70 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
chromatin binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
mRNA processing Orthology biological process
apoptotic process Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
multicellular organism development Orthology biological process
nervous system development Orthology biological process
microtubule binding Orthology molecular function
RNA splicing Orthology biological process
membrane Orthology cellular component
cell junction Orthology cellular component
cell differentiation Orthology biological process
axon Orthology cellular component
identical protein binding Orthology molecular function
protein homodimerization activity Orthology molecular function
cell projection Orthology cellular component
neuron projection Orthology cellular component
synapse Orthology cellular component
postsynaptic membrane Orthology cellular component
protein heterodimerization activity Orthology molecular function
perinuclear region of cytoplasm Orthology cellular component
extracellular exosome Orthology cellular component
postsynapse Orthology cellular component
mRNA splicing, via spliceosome Orthology biological process
regulation of gene expression Orthology biological process
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
organelle organization Orthology biological process
membrane organization Orthology biological process
macromolecular complex Orthology cellular component
intracellular part Orthology cellular component
animal organ development Orthology biological process
cytoplasmic part Orthology cellular component
organelle Orthology cellular component
neuron part Orthology cellular component
nuclear body Orthology cellular component
negative regulation of gene expression Orthology biological process
plasma membrane part Orthology cellular component
ribosome Orthology cellular component
cell projection part Orthology cellular component
cellular process Orthology biological process
plasma membrane region Orthology cellular component
cytoskeletal part Orthology cellular component
protein phosphorylation Orthology biological process
synaptic membrane Orthology cellular component
macromolecular complex binding Orthology molecular function
organelle part Orthology cellular component
neuronal cell body Orthology cellular component
mRNA catabolic process Orthology biological process
synapse part Orthology cellular component
positive regulation of gene expression Orthology biological process
translational initiation Orthology biological process
regulation of signaling Orthology biological process
chemical synaptic transmission Orthology biological process
organic substance transport Orthology biological process
cell projection assembly Orthology biological process
neuron projection development Orthology biological process
transmembrane transport Orthology biological process
metal ion transport Orthology biological process
regulation of molecular function Orthology biological process
proteolysis Orthology biological process
intracellular transport Orthology biological process

GO (Orthology)

104 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
regulation of alternative mRNA splicing, via spliceosome Hs biological process
chromosome, centromeric region Hs cellular component
positive regulation of receptor internalization Hs biological process
G-quadruplex RNA binding Hs molecular function
nucleic acid binding Hs molecular function
chromatin binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
chromosome Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
polysome Hs cellular component
mRNA cap binding complex Hs cellular component
plasma membrane Hs cellular component
mRNA processing Hs biological process
regulation of translation Hs biological process
apoptotic process Hs biological process
cellular response to DNA damage stimulus Hs biological process
multicellular organism development Hs biological process
nervous system development Hs biological process
muscle organ development Hs biological process
microtubule binding Hs molecular function
poly(U) RNA binding Hs molecular function
RNA splicing Hs biological process
chromocenter Hs cellular component
cytoplasmic stress granule Hs cellular component
postsynaptic density Hs cellular component
Cajal body Hs cellular component
membrane Hs cellular component
viral process Hs biological process
negative regulation of translation Hs biological process
viral replication complex Hs cellular component
extrinsic component of plasma membrane Hs cellular component
cytosolic large ribosomal subunit Hs cellular component
cell junction Hs cellular component
cell differentiation Hs biological process
translation repressor activity Hs molecular function
axon Hs cellular component
dendrite Hs cellular component
growth cone Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
gene silencing by RNA Hs biological process
translation initiation factor binding Hs molecular function
filopodium tip Hs cellular component
SMN complex Hs cellular component
positive regulation of histone phosphorylation Hs biological process
RNA strand annealing activity Hs molecular function
poly(G) binding Hs molecular function
cellular response to UV Hs biological process
methylated histone binding Hs molecular function
siRNA binding Hs molecular function
miRNA binding Hs molecular function
RNA stem-loop binding Hs molecular function
ribonucleoprotein granule Hs cellular component
cytoplasmic ribonucleoprotein granule Hs cellular component
presynaptic membrane Hs cellular component
polysomal ribosome Hs cellular component
identical protein binding Hs molecular function
protein homodimerization activity Hs molecular function
cell projection Hs cellular component
neuron projection Hs cellular component
ribosome binding Hs molecular function
costamere Hs cellular component
dendritic spine Hs cellular component
perikaryon Hs cellular component
regulation of mRNA stability Hs biological process
axon terminus Hs cellular component
ion channel binding Hs molecular function
synapse Hs cellular component
postsynaptic membrane Hs cellular component
positive regulation of translation Hs biological process
negative regulation of translational initiation Hs biological process
regulation of neurotransmitter secretion Hs biological process
protein heterodimerization activity Hs molecular function
mRNA 5'-UTR binding Hs molecular function
perinuclear region of cytoplasm Hs cellular component
mRNA transport Hs biological process
regulation of filopodium assembly Hs biological process
positive regulation of filopodium assembly Hs biological process
regulation of gene silencing by miRNA Hs biological process
positive regulation of dendritic spine development Hs biological process
extracellular exosome Hs cellular component
dynein complex binding Hs molecular function
neuronal ribonucleoprotein granule Hs cellular component
glial cell projection Hs cellular component
cellular response to virus Hs biological process
presynapse Hs cellular component
postsynapse Hs cellular component
negative regulation of voltage-gated calcium channel activity Hs biological process
positive regulation of proteasomal protein catabolic process Hs biological process
dendritic filopodium Hs cellular component
messenger ribonucleoprotein complex Hs cellular component
growth cone filopodium Hs cellular component
sequence-specific mRNA binding Hs molecular function
ribonucleoprotein complex Hs cellular component
negative regulation of synaptic vesicle exocytosis Hs biological process
positive regulation of gene silencing by miRNA Hs biological process
negative regulation of cytoplasmic translation Hs biological process
positive regulation of response to DNA damage stimulus Hs biological process

GO (Blast)

72 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromosome, centromeric region Hs cellular component 348 1.87e-113
G-quadruplex RNA binding Hs molecular function 409 3.63e-137
nucleic acid binding Hs molecular function 409 3.63e-137
chromatin binding Hs molecular function 348 1.87e-113
RNA binding Hs molecular function 409 3.63e-137
mRNA binding Hs molecular function 409 3.63e-137
mRNA 3'-UTR binding Hs molecular function 409 3.63e-137
protein binding Hs molecular function 409 3.63e-137
nucleus Hs cellular component 409 3.63e-137
nucleoplasm Hs cellular component 348 1.87e-113
chromosome Hs cellular component 348 1.87e-113
nucleolus Hs cellular component 409 3.63e-137
cytoplasm Hs cellular component 409 3.63e-137
cytosol Hs cellular component 409 3.63e-137
polysome Hs cellular component 409 3.63e-137
mRNA cap binding complex Hs cellular component 348 1.87e-113
plasma membrane Hs cellular component 348 1.87e-113
microtubule binding Hs molecular function 348 1.87e-113
poly(U) RNA binding Hs molecular function 348 1.87e-113
chromocenter Hs cellular component 348 1.87e-113
cytoplasmic stress granule Hs cellular component 348 1.87e-113
postsynaptic density Hs cellular component 348 1.87e-113
Cajal body Hs cellular component 348 1.87e-113
membrane Hs cellular component 409 3.63e-137
viral replication complex Hs cellular component 348 1.87e-113
extrinsic component of plasma membrane Hs cellular component 348 1.87e-113
cytosolic large ribosomal subunit Hs cellular component 402 4.31e-134
cell junction Hs cellular component 348 1.87e-113
translation repressor activity Hs molecular function 348 1.87e-113
axon Hs cellular component 409 3.63e-137
dendrite Hs cellular component 409 3.63e-137
growth cone Hs cellular component 348 1.87e-113
intracellular ribonucleoprotein complex Hs cellular component 348 1.87e-113
translation initiation factor binding Hs molecular function 348 1.87e-113
filopodium tip Hs cellular component 348 1.87e-113
SMN complex Hs cellular component 348 1.87e-113
RNA strand annealing activity Hs molecular function 409 3.63e-137
poly(G) binding Hs molecular function 348 1.87e-113
methylated histone binding Hs molecular function 348 1.87e-113
siRNA binding Hs molecular function 348 1.87e-113
miRNA binding Hs molecular function 348 1.87e-113
RNA stem-loop binding Hs molecular function 348 1.87e-113
ribonucleoprotein granule Hs cellular component 409 3.63e-137
cytoplasmic ribonucleoprotein granule Hs cellular component 348 1.87e-113
presynaptic membrane Hs cellular component 348 1.87e-113
polysomal ribosome Hs cellular component 348 1.87e-113
identical protein binding Hs molecular function 402 4.31e-134
protein homodimerization activity Hs molecular function 409 3.63e-137
cell projection Hs cellular component 348 1.87e-113
neuron projection Hs cellular component 348 1.87e-113
ribosome binding Hs molecular function 348 1.87e-113
costamere Hs cellular component 409 3.63e-137
dendritic spine Hs cellular component 409 3.63e-137
perikaryon Hs cellular component 348 1.87e-113
axon terminus Hs cellular component 348 1.87e-113
ion channel binding Hs molecular function 348 1.87e-113
synapse Hs cellular component 348 1.87e-113
postsynaptic membrane Hs cellular component 348 1.87e-113
protein heterodimerization activity Hs molecular function 409 3.63e-137
mRNA 5'-UTR binding Hs molecular function 348 1.87e-113
perinuclear region of cytoplasm Hs cellular component 409 3.63e-137
extracellular exosome Hs cellular component 402 4.31e-134
dynein complex binding Hs molecular function 348 1.87e-113
neuronal ribonucleoprotein granule Hs cellular component 348 1.87e-113
glial cell projection Hs cellular component 348 1.87e-113
presynapse Hs cellular component 348 1.87e-113
postsynapse Hs cellular component 348 1.87e-113
dendritic filopodium Hs cellular component 348 1.87e-113
messenger ribonucleoprotein complex Hs cellular component 348 1.87e-113
growth cone filopodium Hs cellular component 348 1.87e-113
sequence-specific mRNA binding Hs molecular function 348 1.87e-113
ribonucleoprotein complex Hs cellular component 348 1.87e-113

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 0.003
RNA binding Gene3D molecular function 6.1E-25

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