Aniseed - Gene card

Gene Card

Best human hits

GALE; TGDS; UXS1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014376

Gene Model ID

KH2012:KH.S369.6

Location

KhS369:58489..74318

Transcript Models and Sequences

KH2012:KH.S369.6.v1.C.SL1-1
KH2012:KH.S369.6.v1.C.SL2-1
KH2012:KH.S369.6.v2.C.SL3-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002128449.3

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cieg004i09

Plate: R1CiGC16g03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
UDP_G4E	TIGRFAM	UDP-glucose 4-epimerase
NAD(P)-bd_dom_sf	SUPERFAMILY	NAD(P)-binding domain superfamily
UDP_G4E	CDD	UDP-glucose 4-epimerase
NAD(P)-bd_dom	Pfam	NAD(P)-binding domain

GOSlim

15 results

GO Term	Annotation Origin	Type
catalytic activity	Orthology	molecular function
cytoplasm	Blast	cellular component
mitochondrion	Blast	cellular component
Golgi apparatus	Blast	cellular component
cytosol	Orthology	cellular component
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
identical protein binding	Orthology	molecular function
protein homodimerization activity	Orthology	molecular function
coenzyme binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
organic substance metabolic process	Orthology	biological process
Golgi membrane	Blast	cellular component
anion binding	Blast	molecular function
nucleotide binding	Blast	molecular function

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
catalytic activity	Hs	molecular function
UDP-N-acetylglucosamine 4-epimerase activity	Hs	molecular function
UDP-glucose 4-epimerase activity	Hs	molecular function
cytosol	Hs	cellular component
carbohydrate metabolic process	Hs	biological process
galactose metabolic process	Hs	biological process
isomerase activity	Hs	molecular function
racemase and epimerase activity, acting on carbohydrates and derivatives	Hs	molecular function
galactose catabolic process	Hs	biological process
identical protein binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
coenzyme binding	Hs	molecular function
extracellular exosome	Hs	cellular component

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
catalytic activity	Hs	molecular function	461	2.25e-163
UDP-N-acetylglucosamine 4-epimerase activity	Hs	molecular function	461	2.25e-163
UDP-glucose 4-epimerase activity	Hs	molecular function	461	2.25e-163
cytoplasm	Hs	cellular component	69.3	6.88e-13
mitochondrion	Hs	cellular component	69.3	6.88e-13
Golgi apparatus	Hs	cellular component	69.3	6.88e-13
cytosol	Hs	cellular component	461	2.25e-163
dTDP-glucose 4,6-dehydratase activity	Hs	molecular function	70.1	2.81e-13
membrane	Hs	cellular component	69.3	6.88e-13
integral component of membrane	Hs	cellular component	69.3	6.88e-13
lyase activity	Hs	molecular function	70.1	2.81e-13
carboxy-lyase activity	Hs	molecular function	69.3	6.88e-13
isomerase activity	Hs	molecular function	461	2.25e-163
racemase and epimerase activity, acting on carbohydrates and derivatives	Hs	molecular function	461	2.25e-163
Golgi cisterna membrane	Hs	cellular component	69.3	6.88e-13
identical protein binding	Hs	molecular function	461	2.25e-163
protein homodimerization activity	Hs	molecular function	461	2.25e-163
UDP-glucuronate decarboxylase activity	Hs	molecular function	69.3	6.88e-13
coenzyme binding	Hs	molecular function	461	2.25e-163
extracellular exosome	Hs	cellular component	461	2.25e-163
NAD+ binding	Hs	molecular function	69.3	6.88e-13

GO (InterProScan)