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Gateway full ORF

2 results

cien104075

Plate: VES86_O14

cima876962

Plate: VES68_O01

Gene collection 1 (N. Satoh)

5 results

citb1f6

Plate: R1CiGC28f07

citb2i8

Plate: R1CiGC28f02

cieg001e09

Plate: R1CiGC15b07

cicl015n02

Plate: R1CiGC10a12

ciad054o15

Plate: R1CiGC05n19

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Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom Pfam RNA recognition motif domain
RRM_dom SMART RNA recognition motif domain
RRM_dom ProSiteProfiles RNA recognition motif domain

GOSlim

29 results

GO Term Annotation Origin Type
angiogenesis Orthology biological process
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
protein C-terminus binding Orthology molecular function
membrane Orthology cellular component
nuclear speck Blast cellular component
identical protein binding Orthology molecular function
cell projection Blast cellular component
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
extracellular exosome Orthology cellular component
cell periphery Orthology cellular component
cytoplasmic part Orthology cellular component
negative regulation of gene expression Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
sequence-specific DNA binding Orthology molecular function
enzyme binding Orthology molecular function
cellular response to organic substance Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
nuclear part Blast cellular component
nuclear body Blast cellular component
intracellular organelle part Blast cellular component
ribosome Blast cellular component

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
angiogenesis Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cell cortex Hs cellular component
protein C-terminus binding Hs molecular function
membrane Hs cellular component
negative regulation of translation Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
cytoplasmic ribonucleoprotein granule Hs cellular component
telomeric DNA binding Hs molecular function
identical protein binding Hs molecular function
DNA topoisomerase binding Hs molecular function
positive regulation of transcription from RNA polymerase II promoter Hs biological process
mRNA 5'-UTR binding Hs molecular function
extracellular exosome Hs cellular component
cellular response to epidermal growth factor stimulus Hs biological process
positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter Hs biological process

GO (Blast)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 90.9 2.48e-19
DNA binding Hs molecular function 90.9 2.48e-19
RNA binding Hs molecular function 90.9 2.48e-19
protein binding Hs molecular function 90.9 2.48e-19
nucleus Hs cellular component 90.9 2.48e-19
nucleoplasm Hs cellular component 90.9 2.48e-19
U6atac snRNP Hs cellular component 45.4 6.21e-05
nucleolus Hs cellular component 90.9 2.48e-19
cytoplasm Hs cellular component 90.9 2.48e-19
cell cortex Hs cellular component 90.9 2.48e-19
protein C-terminus binding Hs molecular function 90.9 2.48e-19
Cajal body Hs cellular component 45.4 6.21e-05
large ribosomal subunit Hs cellular component 42.0 1.69e-04
membrane Hs cellular component 90.9 2.48e-19
nuclear speck Hs cellular component 45.4 6.21e-05
U6 snRNA binding Hs molecular function 45.4 6.21e-05
dendrite Hs cellular component 42.0 1.69e-04
intracellular ribonucleoprotein complex Hs cellular component 90.9 2.48e-19
U4 snRNA binding Hs molecular function 45.4 6.21e-05
U6atac snRNA binding Hs molecular function 45.4 6.21e-05
cytoplasmic ribonucleoprotein granule Hs cellular component 90.9 2.48e-19
telomeric DNA binding Hs molecular function 90.9 2.48e-19
histone binding Hs molecular function 45.4 6.21e-05
identical protein binding Hs molecular function 90.9 2.48e-19
cell projection Hs cellular component 42.0 1.69e-04
DNA topoisomerase binding Hs molecular function 90.9 2.48e-19
mRNA 5'-UTR binding Hs molecular function 90.9 2.48e-19
extracellular exosome Hs cellular component 90.9 2.48e-19
U4/U6 snRNP Hs cellular component 45.4 6.21e-05
ubiquitin-specific protease binding Hs molecular function 45.4 6.21e-05

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 9.67E-24