Aniseed - Gene card

Gene Card

Best human hits

RBMS1; RBMS2; RBMS3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014398

Gene Model ID

KH2012:KH.S390.2

Location

KhS390:56167..64973

Transcript Models and Sequences

KH2012:KH.S390.2.v1.A.nonSL11-1
KH2012:KH.S390.2.v1.A.nonSL7-1
KH2012:KH.S390.2.v1.A.nonSL8-1
KH2012:KH.S390.2.v1.A.nonSL9-1
KH2012:KH.S390.2.v1.A.SL10-1
KH2012:KH.S390.2.v1.A.SL6-1
KH2012:KH.S390.2.v1.R.ND1-1
KH2012:KH.S390.2.v2.A.SL3-1
KH2012:KH.S390.2.v3.A.SL2-1
KH2012:KH.S390.2.v3.A.SL4-1
KH2012:KH.S390.2.v4.A.SL5-1

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000006391
NCBI Reference Sequence	XM_002125868.3
NCBI Reference Sequence	XM_009862195.1
NCBI Reference Sequence	XM_009862197.2
NCBI Reference Sequence	XM_009862201.2

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cieg022l06

Plate: R1CiGC19c17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	Pfam	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	SMART	RNA recognition motif domain
Hud_Sxl_RNA	PRINTS	Paraneoplastic encephalomyelitis antigen

GOSlim

13 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
double-stranded DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
DNA replication	Orthology	biological process
RNA processing	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
negative regulation of canonical Wnt signaling pathway	Orthology	biological process

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
double-stranded DNA binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
DNA replication	Hs	biological process
RNA processing	Hs	biological process
poly(A) binding	Hs	molecular function
poly(U) RNA binding	Hs	molecular function
positive regulation of gene expression	Hs	biological process
negative regulation of gene expression	Hs	biological process
mRNA 3'-UTR AU-rich region binding	Hs	molecular function
positive regulation of translation	Hs	biological process
negative regulation of canonical Wnt signaling pathway	Hs	biological process

GO (Blast)