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Gene Card

Best human hits

EXOSC7; EXOSC8; EXOSC9

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014405

Gene Model ID

KH2012:KH.S390.9

Location

KhS390:33129..38808

Transcript Models and Sequences

  KH2012:KH.S390.9.v1.B.SL1-1
KH2012:KH.S390.9.v2.B.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000025134
NCBI Reference Sequence XM_002123657.2
Collections

Gateway full ORF

2 results

cima878602

Plate: VES68_G08

cien210934

Plate: VES103_A01

Gene collection 1 (N. Satoh)

2 results

cieg015j17

Plate: R1CiGC17j20

citb054l15

Plate: R1CiGC45j20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Rrp45 CDD Exosome complex component RRP45
Ribosomal_S5_D2-typ_fold SUPERFAMILY Ribosomal protein S5 domain 2-type fold
ExoRNase_PH_dom1 Pfam Exoribonuclease, phosphorolytic domain 1
ExoRNase_PH_dom2_sf SUPERFAMILY Exoribonuclease, PH domain 2 superfamily
ExoRNase_PH_dom2 Pfam Exoribonuclease, phosphorolytic domain 2
PNPase/RNase_PH_dom_sf Gene3D PNPase/RNase PH domain superfamily

GOSlim

25 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process Orthology biological process
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
RNA processing Orthology biological process
RNA catabolic process Orthology biological process
immune response Orthology biological process
identical protein binding Blast molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
extracellular exosome Orthology cellular component
RNA metabolic process Orthology biological process
hydrolase activity Orthology molecular function
nuclear lumen Orthology cellular component
macromolecular complex Orthology cellular component
cytoplasmic part Orthology cellular component
intracellular part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
transcription factor binding Orthology molecular function
cellular component organization Orthology biological process
mRNA catabolic process Orthology biological process
mRNA processing Orthology biological process

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
3'-5'-exoribonuclease activity Hs molecular function
nuclear exosome (RNase complex) Hs cellular component
cytoplasmic exosome (RNase complex) Hs cellular component
exosome (RNase complex) Hs cellular component
nuclear chromosome Hs cellular component
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Hs biological process
nuclear-transcribed mRNA catabolic process Hs biological process
RNA polymerase II activating transcription factor binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
rRNA processing Hs biological process
RNA processing Hs biological process
immune response Hs biological process
AU-rich element binding Hs molecular function
positive regulation of cell growth Hs biological process
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' Hs biological process
U1 snRNA 3'-end processing Hs biological process
U4 snRNA 3'-end processing Hs biological process
U5 snRNA 3'-end processing Hs biological process
regulation of mRNA stability Hs biological process
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
extracellular exosome Hs cellular component
nuclear mRNA surveillance Hs biological process
nuclear polyadenylation-dependent rRNA catabolic process Hs biological process
nuclear polyadenylation-dependent tRNA catabolic process Hs biological process
nuclear polyadenylation-dependent mRNA catabolic process Hs biological process

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
3'-5'-exoribonuclease activity Hs molecular function 273 6.75e-88
nuclear exosome (RNase complex) Hs cellular component 273 6.75e-88
cytoplasmic exosome (RNase complex) Hs cellular component 273 6.75e-88
exosome (RNase complex) Hs cellular component 273 6.75e-88
nuclear chromosome Hs cellular component 273 6.75e-88
RNA polymerase II activating transcription factor binding Hs molecular function 273 6.75e-88
RNA binding Hs molecular function 273 6.75e-88
protein binding Hs molecular function 273 6.75e-88
nucleus Hs cellular component 273 6.75e-88
nucleoplasm Hs cellular component 273 6.75e-88
nucleolus Hs cellular component 273 6.75e-88
cytoplasm Hs cellular component 273 6.75e-88
cytosol Hs cellular component 273 6.75e-88
AU-rich element binding Hs molecular function 273 6.75e-88
identical protein binding Hs molecular function 110 4.88e-28
extracellular exosome Hs cellular component 273 6.75e-88

GO (InterProScan)

2 results

GO Term Analysis Type e-value
exosome (RNase complex) CDD cellular component 1.03822E-143
RNA processing CDD biological process 1.03822E-143

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