Aniseed - Gene card

Gene Card

Best human hits

MRPS9; RPS16

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014465

Gene Model ID

KH2012:KH.S406.5

Location

KhS406:19601..21152

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000020211
NCBI Reference Sequence	XM_002126195.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

citb038b08

Plate: R1CiGC32d03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Ribosomal_S5_D2-typ_fold	SUPERFAMILY	Ribosomal protein S5 domain 2-type fold
Ribosomal_S9_CS	ProSitePatterns	Ribosomal protein S9, conserved site
Ribosomal_S5_D2-typ_fold_subgr	Gene3D	Ribosomal protein S5 domain 2-type fold, subgroup
Ribosomal_S9	PANTHER	Ribosomal protein S9
Ribosomal_S9	Pfam	Ribosomal protein S9

GOSlim

14 results

GO Term	Annotation Origin	Type
RNA binding	Blast	molecular function
structural constituent of ribosome	Blast	molecular function
protein binding	Blast	molecular function
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
mitochondrion	Blast	cellular component
mitochondrial inner membrane	Blast	cellular component
cytosol	Blast	cellular component
ribosome	Blast	cellular component
focal adhesion	Blast	cellular component
membrane	Blast	cellular component
extracellular exosome	Blast	cellular component
mitochondrial matrix	Blast	cellular component
intracellular organelle part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	136	7.24e-42
structural constituent of ribosome	Hs	molecular function	136	7.24e-42
protein binding	Hs	molecular function	136	7.24e-42
nucleoplasm	Hs	cellular component	136	7.24e-42
nucleolus	Hs	cellular component	58.2	1.03e-10
mitochondrion	Hs	cellular component	58.2	1.03e-10
mitochondrial inner membrane	Hs	cellular component	58.2	1.03e-10
mitochondrial small ribosomal subunit	Hs	cellular component	58.2	1.03e-10
cytosol	Hs	cellular component	136	7.24e-42
ribosome	Hs	cellular component	136	7.24e-42
focal adhesion	Hs	cellular component	136	7.24e-42
small ribosomal subunit	Hs	cellular component	136	7.24e-42
membrane	Hs	cellular component	136	7.24e-42
cytosolic small ribosomal subunit	Hs	cellular component	136	7.24e-42
intracellular ribonucleoprotein complex	Hs	cellular component	136	7.24e-42
extracellular exosome	Hs	cellular component	136	7.24e-42

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	3.7E-68
ribosome	PANTHER	cellular component	3.7E-68
translation	PANTHER	biological process	3.7E-68

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cima83733

cima823364

Gene collection 1 (N. Satoh)

ciad008l03

citb038b08

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)