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GENE CARD

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Gene Card

Best human hits

FIBCD1; TNR; TNXB

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014476

Gene Model ID

KH2012:KH.S423.2

Location

KhS423:48740..52401

Transcript Models and Sequences

  KH2012:KH.S423.2.v1.A.nonSL5-1
KH2012:KH.S423.2.v1.A.SL1-1
KH2012:KH.S423.2.v2.R.ND4-1
KH2012:KH.S423.2.v3.A.SL2-1
KH2012:KH.S423.2.v3.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000017001
NCBI Reference Sequence XM_018816954.1
Collections

Gateway full ORF

2 results

cima813715

Plate: VES58_E14

cima833645

Plate: VES62_A14

Gene collection 1 (N. Satoh)

2 results

cilv038c20

Plate: R1CiGC28k03

cieg051o19

Plate: R1CiGC23f06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Fibrinogen_a/b/g_C_dom SMART Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen_a/b/g_C_dom ProSiteProfiles Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen-like_C SUPERFAMILY Fibrinogen-like, C-terminal
Fibrinogen_a/b/g_C_dom Pfam Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen_a/b/g_C_dom CDD Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain

GOSlim

38 results

GO Term Annotation Origin Type
integrin binding Blast molecular function
protein binding Orthology molecular function
extracellular region Orthology cellular component
extracellular space Orthology cellular component
intracellular Blast cellular component
cell surface Orthology cellular component
membrane Orthology cellular component
integral component of membrane Blast cellular component
membrane raft Blast cellular component
metal ion binding Orthology molecular function
extracellular exosome Orthology cellular component
immune system process Orthology biological process
serine-type endopeptidase activity Orthology molecular function
plasma membrane Orthology cellular component
proteolysis Orthology biological process
G-protein coupled receptor signaling pathway Orthology biological process
innate immune response Orthology biological process
receptor binding Orthology molecular function
protein metabolic process Orthology biological process
binding Orthology molecular function
macromolecular complex Orthology cellular component
immune response Orthology biological process
signal transduction Orthology biological process
signaling receptor activity Orthology molecular function
plasma membrane part Orthology cellular component
small molecule binding Orthology molecular function
anion binding Orthology molecular function
carbohydrate derivative binding Orthology molecular function
cellular protein localization Orthology biological process
intracellular organelle part Orthology cellular component
cytoplasmic vesicle Orthology cellular component
endomembrane system Orthology cellular component
intracellular organelle lumen Orthology cellular component
membrane organization Orthology biological process
organelle organization Orthology biological process
response to bacterium Orthology biological process
defense response Orthology biological process
extracellular region part Blast cellular component

GO (Orthology)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
protein binding Hs molecular function
extracellular region Hs cellular component
membrane Hs cellular component
metal ion binding Hs molecular function
extracellular exosome Hs cellular component
G-protein coupled receptor binding Hs molecular function
complement activation, lectin pathway Hs biological process
immune system process Hs biological process
antigen binding Hs molecular function
serine-type endopeptidase activity Hs molecular function
collagen trimer Hs cellular component
plasma membrane Hs cellular component
proteolysis Hs biological process
complement activation Hs biological process
G-protein coupled receptor signaling pathway Hs biological process
signaling pattern recognition receptor activity Hs molecular function
carbohydrate binding Hs molecular function
extrinsic component of external side of plasma membrane Hs cellular component
sialic acid binding Hs molecular function
protein localization to cell surface Hs biological process
secretory granule lumen Hs cellular component
proteoglycan binding Hs molecular function
recognition of apoptotic cell Hs biological process
innate immune response Hs biological process
calcium-dependent protein binding Hs molecular function
defense response to Gram-negative bacterium Hs biological process
defense response to Gram-positive bacterium Hs biological process
defense response to virus Hs biological process
blood microparticle Hs cellular component
ficolin-1-rich granule lumen Hs cellular component
mannan binding Hs molecular function

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
integrin binding Hs molecular function 176 5.44e-50
protein binding Hs molecular function 199 3.51e-58
extracellular region Hs cellular component 199 3.51e-58
proteinaceous extracellular matrix Hs cellular component 199 3.51e-58
fibrillar collagen trimer Hs cellular component 176 5.44e-50
extracellular space Hs cellular component 176 5.44e-50
intracellular Hs cellular component 176 5.44e-50
chitin binding Hs molecular function 177 6.92e-53
heparin binding Hs molecular function 176 5.44e-50
cell surface Hs cellular component 199 3.51e-58
membrane Hs cellular component 177 6.92e-53
integral component of membrane Hs cellular component 177 6.92e-53
extracellular matrix Hs cellular component 176 5.44e-50
membrane raft Hs cellular component 199 3.51e-58
metal ion binding Hs molecular function 177 6.92e-53
extracellular exosome Hs cellular component 176 5.44e-50
perineuronal net Hs cellular component 199 3.51e-58

GO (InterProScan)

No result

GO Term Analysis Type e-value

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