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Gene Card

Best human hits

SLC22A1; SLC22A2; SLC22A3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014481

Gene Model ID

KH2012:KH.S423.8

Location

KhS423:37994..46441

Transcript Models and Sequences

  KH2012:KH.S423.8.v1.A.SL2-1
KH2012:KH.S423.8.v1.A.SL3-1
KH2012:KH.S423.8.v1.A.SL4-1
KH2012:KH.S423.8.v1.R.ND1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000016270
ENSEMBL ENSCING00000020024
NCBI Reference Sequence XM_002122918.3
Collections

Gateway full ORF

1 result

cien107986

Plate: VES87_D04

Gene collection 1 (N. Satoh)

1 result

cilv015p17

Plate: R1CiGC26e20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
MFS_dom CDD Major facilitator superfamily domain
MFS_trans_sf SUPERFAMILY MFS transporter superfamily
MFS_sugar_transport-like Pfam Major facilitator, sugar transporter-like
MFS_dom ProSiteProfiles Major facilitator superfamily domain
Sugar_transporter_CS ProSitePatterns Sugar transporter, conserved site

GOSlim

16 results

GO Term Annotation Origin Type
protein binding Blast molecular function
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
ion transport Blast biological process
cation transport Blast biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
basolateral plasma membrane Blast cellular component
identical protein binding Blast molecular function
protein homodimerization activity Blast molecular function
synapse Blast cellular component
transmembrane transport Blast biological process
extracellular exosome Blast cellular component
organic substance transport Blast biological process
synapse part Blast cellular component
neuron part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transporter activity Hs molecular function 249 2.50e-75
acetylcholine transmembrane transporter activity Hs molecular function 237 8.65e-71
neurotransmitter transporter activity Hs molecular function 234 7.28e-70
dopamine transmembrane transporter activity Hs molecular function 249 2.50e-75
norepinephrine transmembrane transporter activity Hs molecular function 237 8.65e-71
protein binding Hs molecular function 249 2.50e-75
plasma membrane Hs cellular component 249 2.50e-75
integral component of plasma membrane Hs cellular component 249 2.50e-75
monoamine transmembrane transporter activity Hs molecular function 237 8.65e-71
secondary active organic cation transmembrane transporter activity Hs molecular function 237 8.65e-71
organic anion transmembrane transporter activity Hs molecular function 249 2.50e-75
organic cation transmembrane transporter activity Hs molecular function 249 2.50e-75
quaternary ammonium group transmembrane transporter activity Hs molecular function 249 2.50e-75
membrane Hs cellular component 249 2.50e-75
integral component of membrane Hs cellular component 249 2.50e-75
basolateral plasma membrane Hs cellular component 237 8.65e-71
toxin transporter activity Hs molecular function 249 2.50e-75
transmembrane transporter activity Hs molecular function 237 8.65e-71
identical protein binding Hs molecular function 237 8.65e-71
protein homodimerization activity Hs molecular function 237 8.65e-71
synapse Hs cellular component 234 7.28e-70
extracellular exosome Hs cellular component 234 7.28e-70
presynapse Hs cellular component 234 7.28e-70

GO (InterProScan)

4 results

GO Term Analysis Type e-value
transporter activity ProSitePatterns molecular function
integral component of membrane Pfam cellular component 1.4E-27
transmembrane transporter activity Pfam molecular function 1.4E-27
transmembrane transport Pfam biological process 1.4E-27

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