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GENE CARD

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Gene Card

Best human hits

COL12A1; COL14A1; MATN2

Unique Gene ID

Cirobu.g00014574

Gene Model ID

KH2012:KH.S489.4

Location

KhS489:49520..53020

Transcript Models and Sequences

  KH2012:KH.S489.4.v1.B.ND1-1

External Database Gene Card

External database links

1 result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
VWF_A Pfam von Willebrand factor, type A
Sushi_SCR_CCP_dom SMART Sushi/SCR/CCP domain
Sushi_SCR_CCP_dom Pfam Sushi/SCR/CCP domain
VWF_A SMART von Willebrand factor, type A
vWFA_dom_sf Gene3D von Willebrand factor A-like domain superfamily
Sushi_SCR_CCP_dom ProSiteProfiles Sushi/SCR/CCP domain
Sushi/SCR/CCP_sf SUPERFAMILY Sushi/SCR/CCP superfamily
VWF_A ProSiteProfiles von Willebrand factor, type A
vWFA_dom_sf SUPERFAMILY von Willebrand factor A-like domain superfamily
Sushi_SCR_CCP_dom CDD Sushi/SCR/CCP domain

GOSlim

12 results

GO Term Annotation Origin Type
RNA binding Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
endoplasmic reticulum lumen Blast cellular component
extracellular exosome Blast cellular component
extracellular vesicle Blast cellular component
extracellular region part Blast cellular component
structural molecule activity Blast molecular function
macromolecular complex binding Blast molecular function
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA binding Hs molecular function 82.0 4.27e-17
extracellular matrix structural constituent Hs molecular function 82.0 4.27e-17
calcium ion binding Hs molecular function 79.3 2.90e-16
protein binding Hs molecular function 86.3 1.86e-18
collagen binding Hs molecular function 82.0 4.27e-17
extracellular region Hs cellular component 86.3 1.86e-18
proteinaceous extracellular matrix Hs cellular component 86.3 1.86e-18
collagen trimer Hs cellular component 86.3 1.86e-18
collagen type XII trimer Hs cellular component 86.3 1.86e-18
collagen type XIV trimer Hs cellular component 82.0 4.27e-17
basement membrane Hs cellular component 79.3 2.90e-16
extracellular space Hs cellular component 86.3 1.86e-18
endoplasmic reticulum lumen Hs cellular component 86.3 1.86e-18
extracellular matrix structural constituent conferring tensile strength Hs molecular function 86.3 1.86e-18
protein binding, bridging Hs molecular function 82.0 4.27e-17
extracellular matrix Hs cellular component 86.3 1.86e-18
extracellular exosome Hs cellular component 86.3 1.86e-18
extracellular vesicle Hs cellular component 86.3 1.86e-18

GO (InterProScan)

No result

GO Term Analysis Type e-value