Aniseed - Gene card

Gene Card

Best human hits

ALKBH1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014582

Gene Model ID

KH2012:KH.S494.5

Location

KhS494:46924..50065

Transcript Models and Sequences

KH2012:KH.S494.5.v1.A.nonSL2-1
KH2012:KH.S494.5.v1.A.nonSL3-1
KH2012:KH.S494.5.v1.A.nonSL4-1
KH2012:KH.S494.5.v1.A.nonSL5-1
KH2012:KH.S494.5.v1.A.nonSL6-1
KH2012:KH.S494.5.v1.A.nonSL7-1
KH2012:KH.S494.5.v1.A.nonSL8-1
KH2012:KH.S494.5.v1.A.nonSL9-1
KH2012:KH.S494.5.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000022762
NCBI Reference Sequence	XM_002120873.4

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

cieg027b09

Plate: R1CiGC19l18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
AlkB-like_sf	Gene3D	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily
AlkB-like	Pfam	Alpha-ketoglutarate-dependent dioxygenase AlkB-like
Alkb	PANTHER	Alkylated DNA repair protein AlkB
Oxoglu/Fe-dep_dioxygenase	ProSiteProfiles	Oxoglutarate/iron-dependent dioxygenase

GOSlim

29 results

GO Term	Annotation Origin	Type
catalytic activity	Orthology	molecular function
nucleus	Orthology	cellular component
mitochondrion	Orthology	cellular component
DNA repair	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
metabolic process	Orthology	biological process
regulation of gene expression	Orthology	biological process
cell differentiation	Orthology	biological process
neuron projection development	Orthology	biological process
metal ion binding	Orthology	molecular function
oxidation-reduction process	Orthology	biological process
RNA binding	Orthology	molecular function
cell migration	Orthology	biological process
generation of neurons	Orthology	biological process
RNA processing	Orthology	biological process
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
translational initiation	Orthology	biological process
iron ion binding	Orthology	molecular function
DNA metabolic process	Orthology	biological process
receptor binding	Orthology	molecular function
molecular function regulator	Orthology	molecular function
regulation of signal transduction	Orthology	biological process
chemotaxis	Orthology	biological process
signaling receptor activity	Orthology	molecular function
RNA metabolic process	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
developmental process	Orthology	biological process
hydrolase activity	Orthology	molecular function

GO (Orthology)

39 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
tRNA binding	Hs	molecular function
neuron migration	Hs	biological process
tRNA wobble cytosine modification	Hs	biological process
catalytic activity	Hs	molecular function
DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
nucleus	Hs	cellular component
nuclear euchromatin	Hs	cellular component
mitochondrion	Hs	cellular component
DNA repair	Hs	biological process
DNA dealkylation involved in DNA repair	Hs	biological process
regulation of translation	Hs	biological process
regulation of translational initiation	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
metabolic process	Hs	biological process
ferrous iron binding	Hs	molecular function
regulation of gene expression	Hs	biological process
oxidoreductase activity	Hs	molecular function
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	Hs	molecular function
lyase activity	Hs	molecular function
cell differentiation	Hs	biological process
neuron projection development	Hs	biological process
oxidative single-stranded DNA demethylation	Hs	biological process
chemoattractant activity	Hs	molecular function
RNA repair	Hs	biological process
negative regulation of neuron apoptotic process	Hs	biological process
DNA-N1-methyladenine dioxygenase activity	Hs	molecular function
metal ion binding	Hs	molecular function
developmental growth	Hs	biological process
positive chemotaxis	Hs	biological process
dioxygenase activity	Hs	molecular function
oxidation-reduction process	Hs	biological process
regulation of mitochondrial translation	Hs	biological process
methylcytosine dioxygenase activity	Hs	molecular function
oxidative demethylation	Hs	biological process
DNA demethylation	Hs	biological process
1-ethyladenine demethylase activity	Hs	molecular function
class I DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
class III/IV DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
tRNA demethylase activity	Hs	molecular function

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
tRNA binding	Hs	molecular function	189	1.79e-57
catalytic activity	Hs	molecular function	189	1.79e-57
DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	189	1.79e-57
nucleus	Hs	cellular component	189	1.79e-57
nuclear euchromatin	Hs	cellular component	189	1.79e-57
mitochondrion	Hs	cellular component	189	1.79e-57
ferrous iron binding	Hs	molecular function	189	1.79e-57
oxidoreductase activity	Hs	molecular function	189	1.79e-57
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	Hs	molecular function	189	1.79e-57
lyase activity	Hs	molecular function	189	1.79e-57
chemoattractant activity	Hs	molecular function	189	1.79e-57
DNA-N1-methyladenine dioxygenase activity	Hs	molecular function	189	1.79e-57
metal ion binding	Hs	molecular function	189	1.79e-57
dioxygenase activity	Hs	molecular function	189	1.79e-57
methylcytosine dioxygenase activity	Hs	molecular function	189	1.79e-57
1-ethyladenine demethylase activity	Hs	molecular function	189	1.79e-57
class I DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	189	1.79e-57
class III/IV DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	189	1.79e-57
tRNA demethylase activity	Hs	molecular function	189	1.79e-57

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA repair	PANTHER	biological process	4.2E-95
oxidoreductase activity	ProSiteProfiles	molecular function	9.024
oxidation-reduction process	PANTHER	biological process	4.2E-95