Aniseed - Gene card

Gene Card

Best human hits

DMRT1; DMRTA1; DMRTA2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014653

Gene Model ID

KH2012:KH.S544.3

Location

KhS544:5102..10628

Transcript Models and Sequences

KH2012:KH.S544.3.v1.A.nonSL2-1
KH2012:KH.S544.3.v1.A.SL1-1
KH2012:KH.S544.3.v1.R.nonSL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005905
NCBI Reference Sequence	NM_001078212.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad017d15

Plate: R1CiGC02f18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

10 results

Cirobu.REG.Kh2012.S544:4199-5236|Dmrt1 REG00001587 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.Kh2012.S544:4637-5236|Dmrt1 REG00001588 [ regulatory_region (extended_promoter) ]
  - Cirobu.REG.KH2012.S544:4637-5236_FoxDmut|Dmrt1 REG00001593 [ regulatory_region (extended_promoter) ]
  - Cirobu.REG.Kh2012.S544:4737-5236|Dmrt1 REG00001589 [ regulatory_region (extended_promoter) ]
    - Cirobu.REG.Kh2012.S544:4780-5236|Dmrt1 REG00001590 [ regulatory_region (extended_promoter) ]
      - Cirobu.REG.Kh2012.S544:4837-5236|Dmrt1 REG00001591 [ regulatory_region (extended_promoter) ]
        
        Cirobu.REG.Kh2012.S544:4937-5236|Dmrt1 REG00001592 [ inactive_region ]

Ci-DMRT1-1242/51 REG00000357 [ regulatory_region (extended_promoter) ]
- Ci-DMRT1 -335/51 REG00000358 [ regulatory_region (extended_promoter) ]

Cirobu.REG.KH2012.S544:4240-5239|Dmrt REG00001190 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
DMA	Pfam	DMRTA motif
DM_DNA-bd	ProSiteProfiles	DM DNA-binding domain
DMRT/dsx/mab-3	PANTHER	DMRT/protein doublesex/protein male abnormal 3
DM_DNA-bd	SMART	DM DNA-binding domain
DM_DNA-bd_sf	SUPERFAMILY	DM DNA-binding domain superfamily
DM_DNA-bd	ProSitePatterns	DM DNA-binding domain
DM_DNA-bd	Pfam	DM DNA-binding domain
DM_DNA-bd_sf	Gene3D	DM DNA-binding domain superfamily

GOSlim

16 results

GO Term	Annotation Origin	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
core promoter proximal region sequence-specific DNA binding	Blast	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Blast	molecular function
DNA binding	Blast	molecular function
chromatin binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
cytoplasm	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
identical protein binding	Blast	molecular function
protein homodimerization activity	Blast	molecular function
sequence-specific DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
protein heterodimerization activity	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	118	6.84e-29
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	185	1.19e-51
core promoter proximal region sequence-specific DNA binding	Hs	molecular function	118	6.84e-29
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	118	6.84e-29
DNA binding	Hs	molecular function	185	1.19e-51
chromatin binding	Hs	molecular function	118	6.84e-29
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	185	1.19e-51
protein binding	Hs	molecular function	185	1.19e-51
nucleus	Hs	cellular component	185	1.19e-51
cytoplasm	Hs	cellular component	118	6.84e-29
identical protein binding	Hs	molecular function	118	6.84e-29
protein homodimerization activity	Hs	molecular function	185	1.19e-51
sequence-specific DNA binding	Hs	molecular function	185	1.19e-51
metal ion binding	Hs	molecular function	185	1.19e-51
protein heterodimerization activity	Hs	molecular function	185	1.19e-51

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	3.8E-93
nucleus	PANTHER	cellular component	3.8E-93
regulation of transcription, DNA-templated	PANTHER	biological process	3.8E-93
sequence-specific DNA binding	SMART	molecular function	5.8E-28