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Gene Card

Best human hits

ATG4A; ATG4B; ATG4D

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014664

Gene Model ID

KH2012:KH.S546.1

Location

KhS546:24555..29000

Transcript Models and Sequences

  KH2012:KH.S546.1.v1.A.SL1-1
KH2012:KH.S546.1.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000007827
NCBI Reference Sequence XM_002128468.2
NCBI Reference Sequence XM_004227477.2
Collections

Gateway full ORF

2 results

cien107232

Plate: VES87_K02

cima880491

Plate: VES68_J18

Gene collection 1 (N. Satoh)

1 result

cieg008j08

Plate: R1CiGC16f22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
ATG4B_met PANTHER Cysteine protease ATG4B, metazoa
Peptidase_C54 Pfam Peptidase C54
Peptidase_C54 PANTHER Peptidase C54

GOSlim

17 results

GO Term Annotation Origin Type
endopeptidase activity Orthology molecular function
protein binding Orthology molecular function
cytoplasm Orthology cellular component
mitochondrion Blast cellular component
mitochondrial matrix Blast cellular component
cytosol Orthology cellular component
proteolysis Orthology biological process
protein targeting to membrane Orthology biological process
peptidase activity Orthology molecular function
protein transport Orthology biological process
hydrolase activity Orthology molecular function
ubiquitin-like protein transferase activity Orthology molecular function
ligase activity Orthology molecular function
peptidase activity, acting on L-amino acid peptides Orthology molecular function
organelle organization Orthology biological process
cellular protein modification process Orthology biological process
protein metabolic process Orthology biological process

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
autophagosome assembly Hs biological process
autophagy of mitochondrion Hs biological process
endopeptidase activity Hs molecular function
cysteine-type endopeptidase activity Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
C-terminal protein lipidation Hs biological process
proteolysis Hs biological process
protein targeting to membrane Hs biological process
autophagy Hs biological process
peptidase activity Hs molecular function
cysteine-type peptidase activity Hs molecular function
protein transport Hs biological process
macroautophagy Hs biological process
hydrolase activity Hs molecular function
autophagy of nucleus Hs biological process
positive regulation of protein catabolic process Hs biological process
protein delipidation Hs biological process

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
endopeptidase activity Hs molecular function 339 4.41e-114
cysteine-type endopeptidase activity Hs molecular function 345 2.86e-116
protein binding Hs molecular function 345 2.86e-116
cytoplasm Hs cellular component 345 2.86e-116
mitochondrion Hs cellular component 186 5.60e-54
mitochondrial matrix Hs cellular component 186 5.60e-54
cytosol Hs cellular component 345 2.86e-116
peptidase activity Hs molecular function 345 2.86e-116
cysteine-type peptidase activity Hs molecular function 345 2.86e-116
hydrolase activity Hs molecular function 345 2.86e-116

GO (InterProScan)

3 results

GO Term Analysis Type e-value
cysteine-type endopeptidase activity PANTHER molecular function 5.9E-122
proteolysis PANTHER biological process 5.9E-122
autophagy PANTHER biological process 5.9E-122

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