Gene Card
Best human hits
LARP6; LARP7; SSB
Unique Gene ID
Cirobu.g00014682
Gene Model ID
KH2012:KH.S555.2
Location
KhS555:14378..22426
Transcript Models and Sequences
External database links
3 results
Gateway full ORF
2 results
cien120992
Plate: VES89_I06
cien214463
Plate: VES103_D15
Gene collection 1 (N. Satoh)
2 results
cieg005c05
Plate: R1CiGC16o01
cieg049f16
Plate: R1CiGC23d05
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
6 results
| IPR Term | Analysis | Definition |
|---|---|---|
| La_HTH | ProSiteProfiles | La-type HTH domain |
| Lupus_La | PRINTS | Lupus La protein |
| WH_DNA-bd_sf | SUPERFAMILY | Winged helix DNA-binding domain superfamily |
| La_HTH | Pfam | La-type HTH domain |
| La_HTH | SMART | La-type HTH domain |
| WH-like_DNA-bd_sf | Gene3D | Winged helix-like DNA-binding domain superfamily |
GOSlim
12 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleic acid binding | Blast | molecular function |
| RNA binding | Blast | molecular function |
| protein binding | Blast | molecular function |
| nucleus | Blast | cellular component |
| nucleoplasm | Blast | cellular component |
| cytoplasm | Blast | cellular component |
| cytosol | Blast | cellular component |
| RNA processing | InterProScan | biological process |
| intracellular non-membrane-bounded organelle | Blast | cellular component |
| nuclear lumen | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
| cytoskeletal protein binding | Blast | molecular function |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
17 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| tRNA binding | Hs | molecular function | 60.8 | 6.83e-10 |
| nuclear chromosome, telomeric region | Hs | cellular component | 60.8 | 6.83e-10 |
| nucleic acid binding | Hs | molecular function | 210 | 4.05e-62 |
| RNA binding | Hs | molecular function | 210 | 4.05e-62 |
| mRNA binding | Hs | molecular function | 60.8 | 6.83e-10 |
| protein binding | Hs | molecular function | 210 | 4.05e-62 |
| nucleus | Hs | cellular component | 210 | 4.05e-62 |
| nucleoplasm | Hs | cellular component | 73.2 | 9.60e-14 |
| cytoplasm | Hs | cellular component | 210 | 4.05e-62 |
| cytosol | Hs | cellular component | 73.2 | 9.60e-14 |
| polysome | Hs | cellular component | 210 | 4.05e-62 |
| poly(U) RNA binding | Hs | molecular function | 60.8 | 6.83e-10 |
| myosin binding | Hs | molecular function | 210 | 4.05e-62 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 210 | 4.05e-62 |
| RNA stem-loop binding | Hs | molecular function | 210 | 4.05e-62 |
| mRNA 5'-UTR binding | Hs | molecular function | 210 | 4.05e-62 |
| sequence-specific mRNA binding | Hs | molecular function | 210 | 4.05e-62 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| RNA binding | PRINTS | molecular function | 5.1E-8 |
| nucleus | PRINTS | cellular component | 5.1E-8 |
| RNA processing | PRINTS | biological process | 5.1E-8 |
