Aniseed - Gene card

Gene Card

Best human hits

TBX15; TBX18; TBX22

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014742

Gene Model ID

KH2012:KH.S589.4

Location

KhS589:13065..20896

Transcript Models and Sequences

KH2012:KH.S589.4.v1.R.ND1-1
KH2012:KH.S589.4.v2.A.ND2-2
KH2012:KH.S589.4.v3.A.ND3-2

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000003391
NCBI Reference Sequence	NM_001032416.1
NCBI Reference Sequence	XM_009863455.2

Collections

Gene collection 1 (N. Satoh)

1 result

citb7n20

Plate: R1CiGC29d06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
TF_T-box	ProSiteProfiles	Transcription factor, T-box
TF_T-box	PANTHER	Transcription factor, T-box
TF_T-box_CS	ProSitePatterns	Transcription factor, T-box, conserved site
TF_T-box	SMART	Transcription factor, T-box
T-box_sf	Gene3D	T-box superfamily
TF_T-box	PRINTS	Transcription factor, T-box
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding
TF_T-box	Pfam	Transcription factor, T-box
TF_T-box	CDD	Transcription factor, T-box

GOSlim

14 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Blast	biological process
transcription regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
protein homodimerization activity	Blast	molecular function
protein heterodimerization activity	Blast	molecular function
nucleoplasm part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
transcription regulatory region sequence-specific DNA binding	Hs	molecular function	281	1.05e-85
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	264	6.45e-80
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	274	4.75e-83
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	281	1.05e-85
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	274	4.75e-83
RNA polymerase II transcription corepressor activity	Hs	molecular function	281	1.05e-85
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	264	6.45e-80
DNA binding	Hs	molecular function	281	1.05e-85
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	281	1.05e-85
protein binding	Hs	molecular function	281	1.05e-85
nucleus	Hs	cellular component	281	1.05e-85
protein homodimerization activity	Hs	molecular function	281	1.05e-85
protein heterodimerization activity	Hs	molecular function	281	1.05e-85
Tle3-Aes complex	Hs	cellular component	274	4.75e-83

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	CDD	molecular function	7.07338E-118
nucleus	CDD	cellular component	7.07338E-118
regulation of transcription, DNA-templated	CDD	biological process	7.07338E-118