Aniseed - Gene card

Gene Card

Best human hits

TBX2; TBX3; TBX6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014872

Gene Model ID

KH2012:KH.S654.2

Location

KhS654:30754..32406

Transcript Models and Sequences

KH2012:KH.S654.2.v1.A.nonSL2-1
KH2012:KH.S654.2.v2.A.nonSL3-1
KH2012:KH.S654.2.v2.A.nonSL4-1
KH2012:KH.S654.2.v2.R.nonSL1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002126851.4

Collections

Gene collection 1 (N. Satoh)

1 result

cign077f20

Plate: R1CiGC43g03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

1 results

Ci-FCol1 -2200/1 REG00000863 [ regulatory_region (extended_promoter) ]
- Ci-FCol1 -2200/-1800 REG00000864 [ regulatory_region (extended_promoter) ]
- Ci-FCol1 -229/1 REG00000865 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
T-box_sf	Gene3D	T-box superfamily
TF_T-box	CDD	Transcription factor, T-box
TF_T-box_CS	ProSitePatterns	Transcription factor, T-box, conserved site
TF_T-box	Pfam	Transcription factor, T-box
TF_T-box	SMART	Transcription factor, T-box
TF_T-box	PANTHER	Transcription factor, T-box
TF_T-box	PRINTS	Transcription factor, T-box
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding
TF_Brachyury	PRINTS	Transcription factor, Brachyury
TF_T-box	ProSiteProfiles	Transcription factor, T-box

GOSlim

12 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
sequence-specific DNA binding	Blast	molecular function
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
transcription factor binding	Blast	molecular function
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	228	2.27e-68
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	225	1.23e-69
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	228	2.27e-68
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	228	2.27e-68
RNA polymerase II transcription factor binding	Hs	molecular function	225	1.23e-69
RNA polymerase II activating transcription factor binding	Hs	molecular function	225	1.23e-69
transcriptional repressor activity, RNA polymerase II transcription factor binding	Hs	molecular function	225	1.23e-69
DNA binding	Hs	molecular function	228	2.27e-68
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	228	2.27e-68
protein binding	Hs	molecular function	228	2.27e-68
nucleus	Hs	cellular component	228	2.27e-68
transcription factor complex	Hs	cellular component	228	2.27e-68
sequence-specific DNA binding	Hs	molecular function	228	2.27e-68

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	1.1E-127
nucleus	PANTHER	cellular component	1.1E-127
regulation of transcription, DNA-templated	PANTHER	biological process	1.1E-127