Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000000045
NCBI Reference Sequence	NM_001078329.1

Collections

Gene collection 1 (N. Satoh)

1 result

citb2b12

Plate: R1CiGC28p07

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

1 results

Ci-paraxis -239/-99 REG00000639 [ regulatory_region (enhancer) ]

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
bHLH_dom	CDD	Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom	Pfam	Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf	Gene3D	Helix-loop-helix DNA-binding domain superfamily
bHLH_dom	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom	SMART	Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf	SUPERFAMILY	Helix-loop-helix DNA-binding domain superfamily

GOSlim

38 results

GO Term	Annotation Origin	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
regulation of gene expression	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
cell differentiation	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
negative regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
protein heterodimerization activity	Orthology	molecular function
protein dimerization activity	Orthology	molecular function
anatomical structure formation involved in morphogenesis	Orthology	biological process
animal organ development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
heart development	Orthology	biological process
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
anatomical structure development	Orthology	biological process
extracellular matrix organization	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
transcription factor binding	Orthology	molecular function
system development	Orthology	biological process
nervous system process	Orthology	biological process
head development	Orthology	biological process
nuclear part	Orthology	cellular component

GO (Orthology)

60 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function
mesoderm formation	Hs	biological process
somitogenesis	Hs	biological process
tissue homeostasis	Hs	biological process
endochondral ossification	Hs	biological process
chondrocyte differentiation	Hs	biological process
heart valve morphogenesis	Hs	biological process
heart valve formation	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
nucleus	Hs	cellular component
transcription factor complex	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
mesoderm development	Hs	biological process
muscle organ development	Hs	biological process
positive regulation of cell proliferation	Hs	biological process
anterior/posterior pattern specification	Hs	biological process
regulation of gene expression	Hs	biological process
positive regulation of gene expression	Hs	biological process
cell differentiation	Hs	biological process
collagen fibril organization	Hs	biological process
BMP signaling pathway	Hs	biological process
skeletal muscle cell differentiation	Hs	biological process
tendon development	Hs	biological process
post-anal tail morphogenesis	Hs	biological process
eating behavior	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
bHLH transcription factor binding	Hs	molecular function
sequence-specific DNA binding	Hs	molecular function
ear development	Hs	biological process
skin development	Hs	biological process
establishment of epithelial cell apical/basal polarity	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
protein heterodimerization activity	Hs	molecular function
protein dimerization activity	Hs	molecular function
paraxial mesoderm development	Hs	biological process
muscle organ morphogenesis	Hs	biological process
skeletal system morphogenesis	Hs	biological process
embryonic skeletal system development	Hs	biological process
neuromuscular process controlling posture	Hs	biological process
mesenchymal to epithelial transition	Hs	biological process
face morphogenesis	Hs	biological process
regulation of cartilage development	Hs	biological process
positive regulation of cartilage development	Hs	biological process
sclerotome development	Hs	biological process
E-box binding	Hs	molecular function
cellular response to mechanical stimulus	Hs	biological process
cellular response to transforming growth factor beta stimulus	Hs	biological process
RNA polymerase II transcription factor complex	Hs	cellular component
positive regulation of gastrulation	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	65.9	2.52e-14
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	75.9	2.55e-17
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	71.2	1.37e-15
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	75.9	2.55e-17
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	75.9	2.55e-17
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	71.2	1.37e-15
DNA binding	Hs	molecular function	75.9	2.55e-17
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	75.9	2.55e-17
protein binding	Hs	molecular function	65.9	2.52e-14
nucleus	Hs	cellular component	75.9	2.55e-17
transcription factor complex	Hs	cellular component	71.2	1.37e-15
bHLH transcription factor binding	Hs	molecular function	71.2	1.37e-15
sequence-specific DNA binding	Hs	molecular function	71.2	1.37e-15
protein heterodimerization activity	Hs	molecular function	71.2	1.37e-15
protein dimerization activity	Hs	molecular function	75.9	2.55e-17
E-box binding	Hs	molecular function	71.2	1.37e-15
RNA polymerase II transcription factor complex	Hs	cellular component	75.9	2.55e-17

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein dimerization activity	Gene3D	molecular function	3.7E-18

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences