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GENE CARD

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Gene Card

Best human hits

HGS; WDFY1; WDFY2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015089

Gene Model ID

KH2012:KH.S812.2

Location

KhS812:5444..11569

Transcript Models and Sequences

  KH2012:KH.S812.2.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000017405
NCBI Reference Sequence NM_001078453.1
Collections

Gateway full ORF

4 results

cien53848

Plate: VES78_M17

cien65964

Plate: VES80_E13

cima891051

Plate: VES70_C20

cien128020

Plate: VES90_H08

Gene collection 1 (N. Satoh)

2 results

cicl012e23

Plate: R1CiGC09d20

citb019p20

Plate: R1CiGC31e22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Znf_FYVE-rel ProSiteProfiles Zinc finger, FYVE-related
Znf_FYVE_PHD SUPERFAMILY Zinc finger, FYVE/PHD-type
Znf_FYVE Pfam FYVE zinc finger
WD40_repeat ProSiteProfiles WD40 repeat
WD40_repeat_dom_sf SUPERFAMILY WD40-repeat-containing domain superfamily
WD40/YVTN_repeat-like_dom_sf Gene3D WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat_CS ProSitePatterns WD40 repeat, conserved site
WD40_repeat SMART WD40 repeat
G-protein_beta_WD-40_rep PRINTS G-protein beta WD-40 repeat
WD40_repeat_dom ProSiteProfiles WD40-repeat-containing domain
WD40_repeat Pfam WD40 repeat
Znf_FYVE SMART FYVE zinc finger
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type

GOSlim

23 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
intracellular Blast cellular component
nucleus Orthology cellular component
cytoplasm Orthology cellular component
lysosome Blast cellular component
endosome Orthology cellular component
early endosome Orthology cellular component
cytosol Orthology cellular component
zinc ion binding Orthology molecular function
membrane Blast cellular component
kinase activity Blast molecular function
vesicle Orthology cellular component
intracellular membrane-bounded organelle Blast cellular component
ubiquitin-like protein ligase binding Blast molecular function
metal ion binding Orthology molecular function
extracellular exosome Blast cellular component
protein phosphorylation Orthology biological process
anion binding Orthology molecular function
cell differentiation Orthology biological process
whole membrane Blast cellular component
intracellular organelle part Blast cellular component
bounding membrane of organelle Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
positive regulation of protein phosphorylation Hs biological process
protein binding Hs molecular function
1-phosphatidylinositol binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
endosome Hs cellular component
early endosome Hs cellular component
cytosol Hs cellular component
zinc ion binding Hs molecular function
vesicle Hs cellular component
positive regulation of fat cell differentiation Hs biological process
metal ion binding Hs molecular function

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protein binding Hs molecular function 481 3.57e-170
1-phosphatidylinositol binding Hs molecular function 444 2.47e-155
intracellular Hs cellular component 68.9 1.64e-12
nucleus Hs cellular component 444 2.47e-155
cytoplasm Hs cellular component 481 3.57e-170
lysosome Hs cellular component 68.9 1.64e-12
endosome Hs cellular component 481 3.57e-170
early endosome Hs cellular component 481 3.57e-170
cytosol Hs cellular component 444 2.47e-155
zinc ion binding Hs molecular function 444 2.47e-155
membrane Hs cellular component 68.9 1.64e-12
kinase activity Hs molecular function 68.9 1.64e-12
protein domain specific binding Hs molecular function 68.9 1.64e-12
early endosome membrane Hs cellular component 68.9 1.64e-12
vesicle Hs cellular component 481 3.57e-170
multivesicular body membrane Hs cellular component 68.9 1.64e-12
ESCRT-0 complex Hs cellular component 68.9 1.64e-12
intracellular membrane-bounded organelle Hs cellular component 68.9 1.64e-12
ubiquitin-like protein ligase binding Hs molecular function 68.9 1.64e-12
metal ion binding Hs molecular function 481 3.57e-170
extracellular exosome Hs cellular component 68.9 1.64e-12

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 8.24E-43
metal ion binding SMART molecular function 2.5E-18

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