Aniseed - Gene card

Gene Card

Best human hits

RPS15

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015118

Gene Model ID

KH2012:KH.S852.1

Location

KhS852:14974..17464

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005083
NCBI Reference Sequence	XM_009863744.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cicl021i21

Plate: R1CiGC11o19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
Ribosomal_S19	Hamap	Ribosomal protein S19/S15
Ribosomal_S19	PRINTS	Ribosomal protein S19/S15
Ribosomal_S19A/S15e	TIGRFAM	Ribosomal protein S19A/S15e
Ribosomal_S19_SF	SUPERFAMILY	Ribosomal protein S19, superfamily
Ribosomal_S19_CS	ProSitePatterns	Ribosomal protein S19 conserved site
Ribosomal_S19	PIRSF	Ribosomal protein S19/S15
Ribosomal_S19	PANTHER	Ribosomal protein S19/S15
Ribosomal_S19_SF	Gene3D	Ribosomal protein S19, superfamily
Ribosomal_S19	Pfam	Ribosomal protein S19/S15

GOSlim

17 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
intracellular protein transport	Orthology	biological process
cell differentiation	Orthology	biological process
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal small subunit assembly	Hs	biological process
ribosomal small subunit export from nucleus	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
osteoblast differentiation	Hs	biological process
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
ribosomal small subunit biogenesis	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
DNA binding	Hs	molecular function	222	7.67e-76
RNA binding	Hs	molecular function	222	7.67e-76
structural constituent of ribosome	Hs	molecular function	222	7.67e-76
protein binding	Hs	molecular function	222	7.67e-76
nucleus	Hs	cellular component	222	7.67e-76
nucleoplasm	Hs	cellular component	222	7.67e-76
cytosol	Hs	cellular component	222	7.67e-76
ribosome	Hs	cellular component	222	7.67e-76
focal adhesion	Hs	cellular component	222	7.67e-76
small ribosomal subunit	Hs	cellular component	222	7.67e-76
membrane	Hs	cellular component	222	7.67e-76
cytosolic small ribosomal subunit	Hs	cellular component	222	7.67e-76
intracellular ribonucleoprotein complex	Hs	cellular component	222	7.67e-76

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
RNA binding	ProSitePatterns	molecular function
structural constituent of ribosome	PANTHER	molecular function	2.1E-75
ribosome	PANTHER	cellular component	2.1E-75
translation	PANTHER	biological process	2.1E-75
small ribosomal subunit	TIGRFAM	cellular component	8.3E-66

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cima817573

cima864677

Gene collection 1 (N. Satoh)

ciad011o15

cicl021i21

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)