Gene Card
Best human hits
AP002495.1; L34079.1; XRCC1
Unique Gene ID
Cirobu.g00015204
Gene Model ID
KH2012:KH.S927.2
Location
KhS927:170..1800
Transcript Models and Sequences
External database links
1 result
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000020135 |
Gateway full ORF
4 results
cien61827
Plate: VES79_F24
cien70644
Plate: VES81_D09
cima895766
Plate: VES71_F21
cien166237
Plate: VES96_E01
Gene collection 1 (N. Satoh)
2 results
cieg048p07
Plate: R1CiGC23m14
citb035e03
Plate: R1CiGC32m17
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
9 results
| IPR Term | Analysis | Definition |
|---|---|---|
| BRCT_dom | Pfam | BRCT domain |
| BRCT_dom_sf | SUPERFAMILY | BRCT domain superfamily |
| BRCT_dom | ProSiteProfiles | BRCT domain |
| BRCT_dom | CDD | BRCT domain |
| BRCT_dom_sf | Gene3D | BRCT domain superfamily |
| Galactose-bd-like_sf | SUPERFAMILY | Galactose-binding-like domain superfamily |
| Galactose-bd-like_sf | Gene3D | Galactose-binding-like domain superfamily |
| Xrcc1_N | Pfam | DNA-repair protein Xrcc1, N-terminal |
| BRCT_dom | SMART | BRCT domain |
GOSlim
19 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| response to hypoxia | Orthology | biological process |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| nucleolus | Orthology | cellular component |
| DNA repair | Orthology | biological process |
| cellular response to DNA damage stimulus | Orthology | biological process |
| response to organic substance | Orthology | biological process |
| enzyme binding | Orthology | molecular function |
| intracellular non-membrane-bounded organelle | Orthology | cellular component |
| nuclear lumen | Orthology | cellular component |
| DNA binding | Orthology | molecular function |
| ligase activity | Orthology | molecular function |
| DNA metabolic process | Orthology | biological process |
| brain development | Orthology | biological process |
| anatomical structure morphogenesis | Orthology | biological process |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| hydrolase activity | Orthology | molecular function |
GO (Orthology)
24 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| single strand break repair | Hs | biological process |
| double-strand break repair via homologous recombination | Hs | biological process |
| nuclear chromosome, telomeric region | Hs | cellular component |
| nuclear chromatin | Hs | cellular component |
| response to hypoxia | Hs | biological process |
| damaged DNA binding | Hs | molecular function |
| DNA ligase activity | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| nucleolus | Hs | cellular component |
| DNA repair | Hs | biological process |
| transcription-coupled nucleotide-excision repair | Hs | biological process |
| base-excision repair | Hs | biological process |
| nucleotide-excision repair, DNA gap filling | Hs | biological process |
| double-strand break repair via nonhomologous end joining | Hs | biological process |
| cellular response to DNA damage stimulus | Hs | biological process |
| response to organic substance | Hs | biological process |
| enzyme binding | Hs | molecular function |
| cerebellum morphogenesis | Hs | biological process |
| oxidized DNA binding | Hs | molecular function |
| response to drug | Hs | biological process |
| ERCC4-ERCC1 complex | Hs | cellular component |
| 3' overhang single-stranded DNA endodeoxyribonuclease activity | Hs | molecular function |
GO (Blast)
12 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nuclear chromosome, telomeric region | Hs | cellular component | 178 | 3.38e-49 |
| nuclear chromatin | Hs | cellular component | 178 | 3.38e-49 |
| damaged DNA binding | Hs | molecular function | 178 | 3.38e-49 |
| DNA ligase activity | Hs | molecular function | 178 | 3.38e-49 |
| protein binding | Hs | molecular function | 178 | 3.38e-49 |
| nucleus | Hs | cellular component | 178 | 3.38e-49 |
| nucleoplasm | Hs | cellular component | 178 | 3.38e-49 |
| nucleolus | Hs | cellular component | 178 | 3.38e-49 |
| enzyme binding | Hs | molecular function | 178 | 3.38e-49 |
| oxidized DNA binding | Hs | molecular function | 178 | 3.38e-49 |
| ERCC4-ERCC1 complex | Hs | cellular component | 178 | 3.38e-49 |
| 3' overhang single-stranded DNA endodeoxyribonuclease activity | Hs | molecular function | 178 | 3.38e-49 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| single strand break repair | Pfam | biological process | 3.7E-60 |
| damaged DNA binding | Pfam | molecular function | 3.7E-60 |
| nucleus | Pfam | cellular component | 3.7E-60 |
