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GENE CARD

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  1. Gene 'Phfumi.CG.MTP2014.S4...' > 
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Gene Card

Best human hits

USP20; USP33; USP8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015665

Gene Model ID

NCBI:KH.101242396

Location

KhS1468:1496..8163

Transcript Models and Sequences

  NCBI:KH.XM_009860486.2

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

4 results

cien77365

Plate: VES82_C11

cien96703

Plate: VES85_J12

cima812862

Plate: VES58_C11

cien216475

Plate: VES103_D21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Peptidase_C19_UCH Pfam Peptidase C19, ubiquitin carboxyl-terminal hydrolase
USP_CS ProSitePatterns Ubiquitin specific protease, conserved site
USP_dom ProSiteProfiles Ubiquitin specific protease domain

GOSlim

38 results

GO Term Annotation Origin Type
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
endosome Blast cellular component
early endosome Blast cellular component
Golgi apparatus Blast cellular component
centrosome Blast cellular component
microtubule organizing center Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
proteolysis InterProScan biological process
peptidase activity Blast molecular function
zinc ion binding Blast molecular function
membrane Blast cellular component
hydrolase activity Blast molecular function
midbody Blast cellular component
cell body Blast cellular component
metal ion binding Blast molecular function
perinuclear region of cytoplasm Blast cellular component
receptor binding Blast molecular function
endopeptidase activity Blast molecular function
peptidase activity, acting on L-amino acid peptides Blast molecular function
vacuole Blast cellular component
intracellular organelle part Blast cellular component
whole membrane Blast cellular component
bounding membrane of organelle Blast cellular component
organelle Blast cellular component
postsynapse Blast cellular component
neuron part Blast cellular component
enzyme binding Blast molecular function
plasma membrane part Blast cellular component
cytoplasmic part Blast cellular component
macromolecular complex Blast cellular component
membrane part Blast cellular component
cell adhesion molecule binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
G-protein coupled receptor binding Hs molecular function 148 8.69e-40
cysteine-type endopeptidase activity Hs molecular function 148 8.69e-40
thiol-dependent ubiquitin-specific protease activity Hs molecular function 148 8.69e-40
protein binding Hs molecular function 148 8.69e-40
nucleus Hs cellular component 89.7 1.17e-19
nucleoplasm Hs cellular component 140 6.15e-37
cytoplasm Hs cellular component 148 8.69e-40
endosome Hs cellular component 89.7 1.17e-19
early endosome Hs cellular component 89.7 1.17e-19
autophagosome Hs cellular component 140 6.15e-37
Golgi apparatus Hs cellular component 140 6.15e-37
centrosome Hs cellular component 148 8.69e-40
microtubule organizing center Hs cellular component 148 8.69e-40
cytosol Hs cellular component 148 8.69e-40
cytoskeleton Hs cellular component 148 8.69e-40
plasma membrane Hs cellular component 89.7 1.17e-19
focal adhesion Hs cellular component 140 6.15e-37
peptidase activity Hs molecular function 148 8.69e-40
cysteine-type peptidase activity Hs molecular function 148 8.69e-40
zinc ion binding Hs molecular function 148 8.69e-40
endosome membrane Hs cellular component 89.7 1.17e-19
postsynaptic density Hs cellular component 89.7 1.17e-19
membrane Hs cellular component 89.7 1.17e-19
hydrolase activity Hs molecular function 148 8.69e-40
SH3 domain binding Hs molecular function 89.7 1.17e-19
Ral GTPase binding Hs molecular function 140 6.15e-37
extrinsic component of plasma membrane Hs cellular component 89.7 1.17e-19
midbody Hs cellular component 89.7 1.17e-19
VCB complex Hs cellular component 140 6.15e-37
extrinsic component of endosome membrane Hs cellular component 89.7 1.17e-19
thiol-dependent ubiquitinyl hydrolase activity Hs molecular function 148 8.69e-40
dendritic spine Hs cellular component 89.7 1.17e-19
cell body Hs cellular component 140 6.15e-37
cadherin binding Hs molecular function 89.7 1.17e-19
metal ion binding Hs molecular function 148 8.69e-40
perinuclear region of cytoplasm Hs cellular component 148 8.69e-40

GO (InterProScan)

3 results

GO Term Analysis Type e-value
ubiquitin-dependent protein catabolic process ProSitePatterns biological process
protein deubiquitination Pfam biological process 4.0E-25
thiol-dependent ubiquitinyl hydrolase activity Pfam molecular function 4.0E-25

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