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Gene Card

Best human hits

NR1I2; THRA; VDR

Species

C.savignyi

Unique Gene ID

Cisavi.g00000034

Gene Model ID

Cisavi.CG.ENS81.R0.1249146-1254651

Location

R0:1249145..1254651

Transcript Models and Sequences

  Cisavi.CG.ENS81.R0.1249146-1254651.14633.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Znf_hrmn_rcpt PRINTS Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt ProSitePatterns Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt SMART Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt Pfam Zinc finger, nuclear hormone receptor-type
Znf_NHR/GATA Gene3D Zinc finger, NHR/GATA-type
Znf_hrmn_rcpt ProSiteProfiles Zinc finger, nuclear hormone receptor-type

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

53 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
cell morphogenesis Hs biological process
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
skeletal system development Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
steroid hormone receptor activity Hs molecular function
transcription coactivator activity Hs molecular function
nuclear receptor activity Hs molecular function
thyroid hormone receptor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
xenobiotic metabolic process Hs biological process
calcium ion transport Hs biological process
cellular calcium ion homeostasis Hs biological process
signal transduction Hs biological process
multicellular organism development Hs biological process
drug binding Hs molecular function
steroid metabolic process Hs biological process
zinc ion binding Hs molecular function
negative regulation of cell proliferation Hs biological process
calcitriol receptor activity Hs molecular function
animal organ morphogenesis Hs biological process
positive regulation of gene expression Hs biological process
nuclear body Hs cellular component
intracellular receptor signaling pathway Hs biological process
lithocholic acid receptor activity Hs molecular function
receptor complex Hs cellular component
steroid hormone mediated signaling pathway Hs biological process
sequence-specific DNA binding Hs molecular function
intermediate filament cytoskeleton Hs cellular component
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
retinoid X receptor binding Hs molecular function
intestinal absorption Hs biological process
vitamin D receptor signaling pathway Hs biological process
vitamin D response element binding Hs molecular function
RNA polymerase II transcription factor complex Hs cellular component
calcitriol binding Hs molecular function
lithocholic acid binding Hs molecular function
androgen receptor activity Hs molecular function
cytoskeleton Hs cellular component
androgen receptor signaling pathway Hs biological process

GO (Blast)

37 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription regulatory region sequence-specific DNA binding Hs molecular function 115 1.35e-29
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 115 1.50e-29
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 134 1.26e-36
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 115 1.50e-29
steroid receptor RNA activator RNA binding Hs molecular function 115 1.35e-29
DNA binding Hs molecular function 134 1.26e-36
transcription factor activity, sequence-specific DNA binding Hs molecular function 134 1.26e-36
steroid hormone receptor activity Hs molecular function 134 1.26e-36
transcription coactivator activity Hs molecular function 115 1.50e-29
single-stranded RNA binding Hs molecular function 115 1.35e-29
nuclear receptor activity Hs molecular function 134 1.26e-36
thyroid hormone receptor activity Hs molecular function 115 1.35e-29
protein binding Hs molecular function 134 1.26e-36
nucleus Hs cellular component 134 1.26e-36
nucleoplasm Hs cellular component 134 1.26e-36
cytoplasm Hs cellular component 134 1.26e-36
cytosol Hs cellular component 115 1.35e-29
transcription factor binding Hs molecular function 115 1.35e-29
drug binding Hs molecular function 115 1.50e-29
zinc ion binding Hs molecular function 134 1.26e-36
calcitriol receptor activity Hs molecular function 134 1.26e-36
nuclear body Hs cellular component 115 1.50e-29
TBP-class protein binding Hs molecular function 115 1.35e-29
protein domain specific binding Hs molecular function 115 1.35e-29
chromatin DNA binding Hs molecular function 115 1.35e-29
lithocholic acid receptor activity Hs molecular function 134 1.26e-36
receptor complex Hs cellular component 134 1.26e-36
sequence-specific DNA binding Hs molecular function 134 1.26e-36
transcription regulatory region DNA binding Hs molecular function 115 1.35e-29
intermediate filament cytoskeleton Hs cellular component 115 1.50e-29
metal ion binding Hs molecular function 134 1.26e-36
retinoid X receptor binding Hs molecular function 134 1.26e-36
thyroid hormone binding Hs molecular function 115 1.35e-29
vitamin D response element binding Hs molecular function 134 1.26e-36
RNA polymerase II transcription factor complex Hs cellular component 134 1.26e-36
calcitriol binding Hs molecular function 134 1.26e-36
lithocholic acid binding Hs molecular function 134 1.26e-36

GO (InterProScan)

5 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 2.6E-34
nucleus SMART cellular component 2.6E-34
regulation of transcription, DNA-templated SMART biological process 2.6E-34
zinc ion binding SMART molecular function 2.6E-34
sequence-specific DNA binding SMART molecular function 2.6E-34

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