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Gene Card

Best human hits

NR1H2; NR1I2; VDR

Species

C.savignyi

Unique Gene ID

Cisavi.g00000035

Gene Model ID

Cisavi.CG.ENS81.R0.1257582-1259214

Location

R0:1257581..1259214

Transcript Models and Sequences

  Cisavi.CG.ENS81.R0.1257582-1259214.14635.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
ThyrH_rcpt PRINTS Thyroid hormone receptor
NHR_like_dom_sf SUPERFAMILY Nuclear hormone receptor-like domain superfamily
Nucl_hrmn_rcpt_lig-bd Pfam Nuclear hormone receptor, ligand-binding domain
Nucl_hrmn_rcpt_lig-bd SMART Nuclear hormone receptor, ligand-binding domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

53 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
cell morphogenesis Hs biological process
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
skeletal system development Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
steroid hormone receptor activity Hs molecular function
transcription coactivator activity Hs molecular function
nuclear receptor activity Hs molecular function
thyroid hormone receptor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
xenobiotic metabolic process Hs biological process
calcium ion transport Hs biological process
cellular calcium ion homeostasis Hs biological process
signal transduction Hs biological process
multicellular organism development Hs biological process
drug binding Hs molecular function
steroid metabolic process Hs biological process
zinc ion binding Hs molecular function
negative regulation of cell proliferation Hs biological process
calcitriol receptor activity Hs molecular function
animal organ morphogenesis Hs biological process
positive regulation of gene expression Hs biological process
nuclear body Hs cellular component
intracellular receptor signaling pathway Hs biological process
lithocholic acid receptor activity Hs molecular function
receptor complex Hs cellular component
steroid hormone mediated signaling pathway Hs biological process
sequence-specific DNA binding Hs molecular function
intermediate filament cytoskeleton Hs cellular component
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
retinoid X receptor binding Hs molecular function
intestinal absorption Hs biological process
vitamin D receptor signaling pathway Hs biological process
vitamin D response element binding Hs molecular function
RNA polymerase II transcription factor complex Hs cellular component
calcitriol binding Hs molecular function
lithocholic acid binding Hs molecular function
androgen receptor activity Hs molecular function
cytosol Hs cellular component
cytoskeleton Hs cellular component
androgen receptor signaling pathway Hs biological process

GO (Blast)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 65.5 1.82e-13
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 61.6 4.61e-12
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 87.4 3.08e-21
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 61.6 4.61e-12
RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding Hs molecular function 61.6 4.61e-12
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 65.5 1.82e-13
DNA binding Hs molecular function 87.4 3.08e-21
transcription factor activity, sequence-specific DNA binding Hs molecular function 87.4 3.08e-21
steroid hormone receptor activity Hs molecular function 87.4 3.08e-21
transcription coactivator activity Hs molecular function 65.5 1.82e-13
nuclear receptor activity Hs molecular function 87.4 3.08e-21
thyroid hormone receptor activity Hs molecular function 65.5 1.82e-13
protein binding Hs molecular function 87.4 3.08e-21
nucleus Hs cellular component 87.4 3.08e-21
nucleoplasm Hs cellular component 87.4 3.08e-21
cytoplasm Hs cellular component 87.4 3.08e-21
drug binding Hs molecular function 65.5 1.82e-13
zinc ion binding Hs molecular function 87.4 3.08e-21
calcitriol receptor activity Hs molecular function 87.4 3.08e-21
nuclear body Hs cellular component 65.5 1.82e-13
apolipoprotein A-I receptor binding Hs molecular function 61.6 4.61e-12
lithocholic acid receptor activity Hs molecular function 87.4 3.08e-21
receptor complex Hs cellular component 87.4 3.08e-21
sequence-specific DNA binding Hs molecular function 87.4 3.08e-21
intermediate filament cytoskeleton Hs cellular component 65.5 1.82e-13
metal ion binding Hs molecular function 87.4 3.08e-21
retinoid X receptor binding Hs molecular function 87.4 3.08e-21
ATPase binding Hs molecular function 61.6 4.61e-12
vitamin D response element binding Hs molecular function 87.4 3.08e-21
RNA polymerase II transcription factor complex Hs cellular component 87.4 3.08e-21
calcitriol binding Hs molecular function 87.4 3.08e-21
lithocholic acid binding Hs molecular function 87.4 3.08e-21

GO (InterProScan)

5 results

GO Term Analysis Type e-value
DNA binding PRINTS molecular function 2.5E-7
thyroid hormone receptor activity PRINTS molecular function 2.5E-7
nucleus PRINTS cellular component 2.5E-7
regulation of transcription, DNA-templated Pfam biological process 2.7E-13
steroid hormone mediated signaling pathway Pfam biological process 2.7E-13

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