Aniseed - Gene card

Gene Card

Best human hits

DDX27; DDX46; DDX54

Species

C.savignyi

Unique Gene ID

Cisavi.g00000068

Gene Model ID

Cisavi.CG.ENS81.R0.1645747-1662899

Location

R0:1645746..1662899

Transcript Models and Sequences

Cisavi.CG.ENS81.R0.1645747-1662899.15371.t
Cisavi.CG.ENS81.R0.1645747-1662899.15372.t
Cisavi.CG.ENS81.R0.1645747-1662899.15373.t
Cisavi.CG.ENS81.R0.1645747-1662899.15374.t
Cisavi.CG.ENS81.R0.1645747-1662899.15375.t
Cisavi.CG.ENS81.R0.1645747-1662899.15376.t
Cisavi.CG.ENS81.R0.1645747-1662899.15377.t
Cisavi.CG.ENS81.R0.1645747-1662899.15378.t
Cisavi.CG.ENS81.R0.1645747-1662899.15379.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term	Analysis	Definition
DBP10_C	ProDom	DBP10, C-terminal
Helicase_C	SMART	Helicase, C-terminal
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain
DBP10_C	SMART	DBP10, C-terminal
DDX54/DBP10	PANTHER	DDX54/DBP10 family
RNA_helicase_DEAD_Q_motif	ProSiteProfiles	RNA helicase, DEAD-box type, Q motif
Helicase_C	CDD	Helicase, C-terminal
DBP10_C	Pfam	DBP10, C-terminal
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Helicase_C	Pfam	Helicase, C-terminal
Helicase_C	ProSiteProfiles	Helicase, C-terminal
RNA-helicase_DEAD-box_CS	ProSitePatterns	ATP-dependent RNA helicase DEAD-box, conserved site

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
transcription corepressor activity	Hs	molecular function
RNA binding	Hs	molecular function
ATP-dependent RNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
receptor binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
Golgi apparatus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
RNA processing	Hs	biological process
RNA secondary structure unwinding	Hs	biological process
membrane	Hs	cellular component
RNA metabolic process	Hs	biological process
hydrolase activity	Hs	molecular function
estrogen receptor binding	Hs	molecular function
intracellular estrogen receptor signaling pathway	Hs	biological process
negative regulation of nucleic acid-templated transcription	Hs	biological process

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	729	0.0
fibrillar center	Hs	cellular component	248	3.96e-70
nucleic acid binding	Hs	molecular function	729	0.0
transcription corepressor activity	Hs	molecular function	729	0.0
RNA binding	Hs	molecular function	729	0.0
ATP-dependent RNA helicase activity	Hs	molecular function	729	0.0
helicase activity	Hs	molecular function	729	0.0
receptor binding	Hs	molecular function	729	0.0
protein binding	Hs	molecular function	257	2.20e-74
ATP binding	Hs	molecular function	729	0.0
nucleus	Hs	cellular component	729	0.0
nucleoplasm	Hs	cellular component	248	3.96e-70
chromosome	Hs	cellular component	257	2.20e-74
nucleolus	Hs	cellular component	729	0.0
cytoplasm	Hs	cellular component	729	0.0
Golgi apparatus	Hs	cellular component	729	0.0
Cajal body	Hs	cellular component	248	3.96e-70
membrane	Hs	cellular component	729	0.0
nuclear speck	Hs	cellular component	248	3.96e-70
hydrolase activity	Hs	molecular function	729	0.0
estrogen receptor binding	Hs	molecular function	729	0.0

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	1.3E-50
RNA binding	SMART	molecular function	1.6E-26
ATP-dependent RNA helicase activity	SMART	molecular function	1.6E-26
ATP binding	Pfam	molecular function	1.3E-50
nucleus	SMART	cellular component	1.6E-26