Aniseed - Gene card

Gene Card

Best human hits

NOTCH1; NOTCH2; NOTCH3

Species

C.savignyi

Unique Gene ID

Cisavi.g00000074

Gene Model ID

Cisavi.CG.ENS81.R0.1706014-1723939

Location

R0:1706013..1723939

Transcript Models and Sequences

Cisavi.CG.ENS81.R0.1706014-1723939.15665.t
Cisavi.CG.ENS81.R0.1706014-1723939.15666.t
Cisavi.CG.ENS81.R0.1706014-1723939.15667.t
Cisavi.CG.ENS81.R0.1706014-1723939.15668.t
Cisavi.CG.ENS81.R0.1706014-1723939.15669.t
Cisavi.CG.ENS81.R0.1706014-1723939.15670.t
Cisavi.CG.ENS81.R0.1706014-1723939.15671.t
Cisavi.CG.ENS81.R0.1706014-1723939.15672.t
Cisavi.CG.ENS81.R0.1706014-1723939.15673.t
Cisavi.CG.ENS81.R0.1706014-1723939.15674.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
EGF-type_Asp/Asn_hydroxyl_site	ProSitePatterns	EGF-type aspartate/asparagine hydroxylation site
EGF-like_CS	ProSitePatterns	EGF-like, conserved site
CTDL_fold	SUPERFAMILY	C-type lectin fold
EGF_Ca-bd_CS	ProSitePatterns	EGF-like calcium-binding, conserved site
EGF-like_Ca-bd_dom	SMART	EGF-like calcium-binding domain
EGF-like_CS	Pfam	EGF-like, conserved site
EGF-like_dom	Pfam	EGF-like domain
EGF-like_dom	SMART	EGF-like domain
EGF-like_dom	ProSiteProfiles	EGF-like domain
Growth_fac_rcpt_cys_sf	SUPERFAMILY	Growth factor receptor cysteine-rich domain superfamily
EGF-like_Ca-bd_dom	Pfam	EGF-like calcium-binding domain
S_locus_glycoprot_dom	Pfam	S-locus glycoprotein domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

40 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	502	2.16e-156
core promoter binding	Hs	molecular function	486	9.73e-151
transcriptional activator activity, RNA polymerase II transcription factor binding	Hs	molecular function	486	9.73e-151
acrosomal vesicle	Hs	cellular component	486	9.73e-151
MAML1-RBP-Jkappa- ICN1 complex	Hs	cellular component	486	9.73e-151
chromatin binding	Hs	molecular function	486	9.73e-151
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	486	9.73e-151
enzyme inhibitor activity	Hs	molecular function	486	9.73e-151
receptor activity	Hs	molecular function	502	2.16e-156
transmembrane signaling receptor activity	Hs	molecular function	486	9.73e-151
Notch binding	Hs	molecular function	486	9.73e-151
calcium ion binding	Hs	molecular function	502	2.16e-156
protein binding	Hs	molecular function	502	2.16e-156
extracellular region	Hs	cellular component	502	2.16e-156
nucleus	Hs	cellular component	502	2.16e-156
nucleoplasm	Hs	cellular component	502	2.16e-156
cytoplasm	Hs	cellular component	502	2.16e-156
endoplasmic reticulum	Hs	cellular component	486	9.73e-151
endoplasmic reticulum membrane	Hs	cellular component	502	2.16e-156
Golgi apparatus	Hs	cellular component	486	9.73e-151
cytosol	Hs	cellular component	486	9.73e-151
plasma membrane	Hs	cellular component	502	2.16e-156
integral component of plasma membrane	Hs	cellular component	502	2.16e-156
adherens junction	Hs	cellular component	486	9.73e-151
cell surface	Hs	cellular component	502	2.16e-156
actin cytoskeleton	Hs	cellular component	447	1.23e-137
membrane	Hs	cellular component	502	2.16e-156
integral component of membrane	Hs	cellular component	502	2.16e-156
apical plasma membrane	Hs	cellular component	486	9.73e-151
enzyme binding	Hs	molecular function	486	9.73e-151
cytoplasmic vesicle	Hs	cellular component	486	9.73e-151
chromatin DNA binding	Hs	molecular function	486	9.73e-151
transcription factor activity, ligand-activated RNA polymerase II transcription factor binding	Hs	molecular function	502	2.16e-156
identical protein binding	Hs	molecular function	447	1.23e-137
receptor complex	Hs	cellular component	502	2.16e-156
sequence-specific DNA binding	Hs	molecular function	486	9.73e-151
cadherin binding	Hs	molecular function	447	1.23e-137
metal ion binding	Hs	molecular function	486	9.73e-151
protein heterodimerization activity	Hs	molecular function	486	9.73e-151
cell periphery	Hs	cellular component	486	9.73e-151

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
calcium ion binding	SMART	molecular function	1.0E-9