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GENE CARD

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Gene Card

Best human hits

RAB1A; RAB1B; RAB8B

Species

C.savignyi

Unique Gene ID

Cisavi.g00000082

Gene Model ID

Cisavi.CG.ENS81.R0.1788070-1792968

Location

R0:1788069..1792968

Transcript Models and Sequences

  Cisavi.CG.ENS81.R0.1788070-1792968.15755.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Small_GTP-bd_dom TIGRFAM Small GTP-binding protein domain
Small_GTPase Pfam Small GTPase superfamily
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
autophagosome assembly Hs biological process
Golgi membrane Hs cellular component
nucleotide binding Hs molecular function
GTPase activity Hs molecular function
protein binding Hs molecular function
GTP binding Hs molecular function
cytoplasm Hs cellular component
mitochondrion Hs cellular component
endosome Hs cellular component
early endosome Hs cellular component
endoplasmic reticulum Hs cellular component
endoplasmic reticulum membrane Hs cellular component
endoplasmic reticulum-Golgi intermediate compartment Hs cellular component
Golgi apparatus Hs cellular component
cytosol Hs cellular component
ER to Golgi vesicle-mediated transport Hs biological process
retrograde vesicle-mediated transport, Golgi to ER Hs biological process
endocytosis Hs biological process
autophagy Hs biological process
Golgi organization Hs biological process
protein transport Hs biological process
membrane Hs cellular component
vesicle-mediated transport Hs biological process
cell migration Hs biological process
transport vesicle Hs cellular component
transport vesicle membrane Hs cellular component
melanosome transport Hs biological process
endoplasmic reticulum-Golgi intermediate compartment membrane Hs cellular component
pre-autophagosomal structure membrane Hs cellular component
substrate adhesion-dependent cell spreading Hs biological process
melanosome Hs cellular component
defense response to bacterium Hs biological process
post-translational protein modification Hs biological process
cadherin binding Hs molecular function
vesicle transport along microtubule Hs biological process
COPII vesicle coating Hs biological process
extracellular exosome Hs cellular component
cargo loading into COPII-coated vesicle Hs biological process
positive regulation of ubiquitin protein ligase activity Hs biological process
regulation of autophagosome assembly Hs biological process

GO (Blast)

38 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
Golgi membrane Hs cellular component 374 5.09e-134
nucleotide binding Hs molecular function 374 5.09e-134
GTPase activity Hs molecular function 374 5.09e-134
receptor binding Hs molecular function 230 3.63e-77
protein binding Hs molecular function 374 5.09e-134
GTP binding Hs molecular function 374 5.09e-134
nucleoplasm Hs cellular component 230 3.63e-77
cytoplasm Hs cellular component 374 5.09e-134
mitochondrion Hs cellular component 360 1.05e-128
endosome Hs cellular component 374 5.09e-134
early endosome Hs cellular component 374 5.09e-134
peroxisomal membrane Hs cellular component 230 3.63e-77
endoplasmic reticulum Hs cellular component 374 5.09e-134
endoplasmic reticulum membrane Hs cellular component 374 5.09e-134
endoplasmic reticulum-Golgi intermediate compartment Hs cellular component 360 1.05e-128
Golgi apparatus Hs cellular component 374 5.09e-134
cytosol Hs cellular component 374 5.09e-134
plasma membrane Hs cellular component 230 3.63e-77
synaptic vesicle Hs cellular component 230 3.63e-77
membrane Hs cellular component 374 5.09e-134
nuclear body Hs cellular component 230 3.63e-77
GDP binding Hs molecular function 230 3.63e-77
transport vesicle Hs cellular component 360 1.05e-128
transport vesicle membrane Hs cellular component 374 5.09e-134
secretory granule membrane Hs cellular component 230 3.63e-77
phagocytic vesicle membrane Hs cellular component 230 3.63e-77
TPR domain binding Hs molecular function 230 3.63e-77
cytoplasmic vesicle Hs cellular component 230 3.63e-77
endoplasmic reticulum-Golgi intermediate compartment membrane Hs cellular component 360 1.05e-128
pre-autophagosomal structure membrane Hs cellular component 360 1.05e-128
melanosome Hs cellular component 374 5.09e-134
intracellular membrane-bounded organelle Hs cellular component 230 3.63e-77
cadherin binding Hs molecular function 374 5.09e-134
phagocytic vesicle Hs cellular component 230 3.63e-77
perinuclear region of cytoplasm Hs cellular component 230 3.63e-77
cell tip Hs cellular component 230 3.63e-77
recycling endosome membrane Hs cellular component 230 3.63e-77
extracellular exosome Hs cellular component 374 5.09e-134

GO (InterProScan)

2 results

GO Term Analysis Type e-value
GTPase activity Pfam molecular function 2.7E-67
GTP binding Pfam molecular function 2.7E-67