Gene Card
Best human hits
PABPC3; PUF60; U2AF2
Species
Unique Gene ID
Cisavi.g00002783
Gene Model ID
Cisavi.CG.ENS81.R16.1116447-1122123
Location
R16:1116446..1122123
Transcript Models and Sequences
Cisavi.CG.ENS81.R16.1116447-1122123.11745.t
Cisavi.CG.ENS81.R16.1116447-1122123.11746.t
Cisavi.CG.ENS81.R16.1116447-1122123.11747.t
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| RRM_dom | SMART | RNA recognition motif domain |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| RRM_dom | Pfam | RNA recognition motif domain |
| U2AF_lg | TIGRFAM | U2 snRNP auxilliary factor, large subunit, splicing factor |
| Tra | Pfam | Female-specific protein transformer |
| GO Term | Annotation Origin | Type |
|---|
GO (Orthology)
25 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| commitment complex | Hs | cellular component |
| mRNA splicing, via spliceosome | Hs | biological process |
| Prp19 complex | Hs | cellular component |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| termination of RNA polymerase II transcription | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA export from nucleus | Hs | biological process |
| mRNA export from nucleus | Hs | biological process |
| poly-pyrimidine tract binding | Hs | molecular function |
| RNA splicing | Hs | biological process |
| nuclear speck | Hs | cellular component |
| enzyme binding | Hs | molecular function |
| pre-mRNA 3'-splice site binding | Hs | molecular function |
| mRNA 3'-end processing | Hs | biological process |
| negative regulation of protein ubiquitination | Hs | biological process |
| positive regulation of RNA splicing | Hs | biological process |
| negative regulation of mRNA splicing, via spliceosome | Hs | biological process |
| C2H2 zinc finger domain binding | Hs | molecular function |
| U2-type prespliceosome | Hs | cellular component |
| U2AF | Hs | cellular component |
GO (Blast)
25 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| commitment complex | Hs | cellular component | 529 | 0.0 |
| Prp19 complex | Hs | cellular component | 529 | 0.0 |
| nucleic acid binding | Hs | molecular function | 529 | 0.0 |
| DNA binding | Hs | molecular function | 67.0 | 9.16e-12 |
| RNA binding | Hs | molecular function | 529 | 0.0 |
| protein binding | Hs | molecular function | 529 | 0.0 |
| nucleus | Hs | cellular component | 529 | 0.0 |
| nucleoplasm | Hs | cellular component | 529 | 0.0 |
| spliceosomal complex | Hs | cellular component | 529 | 0.0 |
| cytoplasm | Hs | cellular component | 67.4 | 6.92e-12 |
| cytosol | Hs | cellular component | 67.4 | 6.92e-12 |
| poly(A) binding | Hs | molecular function | 67.4 | 6.92e-12 |
| poly-pyrimidine tract binding | Hs | molecular function | 529 | 0.0 |
| nuclear speck | Hs | cellular component | 529 | 0.0 |
| enzyme binding | Hs | molecular function | 529 | 0.0 |
| cyclin-dependent protein kinase activating kinase holoenzyme complex | Hs | cellular component | 67.0 | 9.16e-12 |
| cell junction | Hs | cellular component | 67.0 | 9.16e-12 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 67.0 | 9.16e-12 |
| pre-mRNA 3'-splice site binding | Hs | molecular function | 529 | 0.0 |
| identical protein binding | Hs | molecular function | 67.0 | 9.16e-12 |
| cadherin binding | Hs | molecular function | 67.0 | 9.16e-12 |
| extracellular exosome | Hs | cellular component | 67.4 | 6.92e-12 |
| C2H2 zinc finger domain binding | Hs | molecular function | 529 | 0.0 |
| U2-type prespliceosome | Hs | cellular component | 529 | 0.0 |
| U2AF | Hs | cellular component | 529 | 0.0 |
GO (InterProScan)
4 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 2.38E-26 |
| RNA binding | TIGRFAM | molecular function | 6.6E-143 |
| nucleus | TIGRFAM | cellular component | 6.6E-143 |
| mRNA processing | TIGRFAM | biological process | 6.6E-143 |
