Aniseed - Gene card

Gene Card

Best human hits

EBF1; EBF3; EBF4

Species

C.savignyi

Unique Gene ID

Cisavi.g00008684

Gene Model ID

Cisavi.CG.ENS81.R5.521849-529571

Location

R5:521848..529571

Transcript Models and Sequences

Cisavi.CG.ENS81.R5.521849-529571.00815.t
Cisavi.CG.ENS81.R5.521849-529571.00816.t
Cisavi.CG.ENS81.R5.521849-529571.00817.t
Cisavi.CG.ENS81.R5.521849-529571.00818.t
Cisavi.CG.ENS81.R5.521849-529571.00819.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
HLH_DNA-bd_sf	Gene3D	Helix-loop-helix DNA-binding domain superfamily
Transcription_factor_COE_CS	ProSitePatterns	Transcription factor COE, conserved site
IPT_dom	Pfam	IPT domain
IPT_dom	SMART	IPT domain
COE_DBD	Pfam	Transcription factor COE, DNA-binding domain
Ig-like_fold	Gene3D	Immunoglobulin-like fold
Transcription_factor_COE	PANTHER	Transcription factor COE
Ig_E-set	SUPERFAMILY	Immunoglobulin E-set
COE_HLH	Pfam	Transcription factor COE, helix-loop-helix domain
COE_DBD_sf	Gene3D	Transcription factor COE, DNA-binding domain superfamily
COE_IPT	CDD	Transcription factor COE, IPT domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
transcription factor binding	Hs	molecular function
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
protein dimerization activity	Hs	molecular function
C2H2 zinc finger domain binding	Hs	molecular function
cell fate determination	Hs	biological process
chromatin binding	Hs	molecular function
brown fat cell differentiation	Hs	biological process
adipose tissue development	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	553
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	597
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	597
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	597
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	553
DNA binding	Hs	molecular function	597
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	597
protein binding	Hs	molecular function	586
nucleus	Hs	cellular component	597
transcription factor binding	Hs	molecular function	553
metal ion binding	Hs	molecular function	597
protein dimerization activity	Hs	molecular function	597
C2H2 zinc finger domain binding	Hs	molecular function	586

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
DNA binding	Pfam	molecular function	5.2E-87
transcription factor activity, sequence-specific DNA binding	CDD	molecular function	7.94171E-54
regulation of transcription, DNA-templated	PANTHER	biological process	8.7E-252
protein dimerization activity	Gene3D	molecular function	1.7E-24