Aniseed - Gene card

Gene Card

Best human hits

TBX4; TBX5; TBX6

Species

C.savignyi

Unique Gene ID

Cisavi.g00011358

Gene Model ID

Cisavi.CG.ENS81.R90.318198-331613

Location

R90:318197..331613

Transcript Models and Sequences

Cisavi.CG.ENS81.R90.318198-331613.16577.t
Cisavi.CG.ENS81.R90.318198-331613.16578.t
Cisavi.CG.ENS81.R90.318198-331613.16579.t
Cisavi.CG.ENS81.R90.318198-331613.16580.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
TF_T-box	ProSiteProfiles	Transcription factor, T-box
TF_T-box	CDD	Transcription factor, T-box
TF_Brachyury	PRINTS	Transcription factor, Brachyury
TF_T-box	PRINTS	Transcription factor, T-box
TF_T-box	Pfam	Transcription factor, T-box
TF_T-box	SMART	Transcription factor, T-box
TF_T-box	PANTHER	Transcription factor, T-box
TF_T-box_CS	ProSitePatterns	Transcription factor, T-box, conserved site
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding
T-box_sf	Gene3D	T-box superfamily

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

50 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor binding	Hs	molecular function
RNA polymerase II activating transcription factor binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
limb morphogenesis	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
positive regulation of transcription, DNA-templated	Hs	biological process
cardiac muscle cell differentiation	Hs	biological process
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
skeletal system development	Hs	biological process
blood vessel development	Hs	biological process
heart looping	Hs	biological process
heart morphogenesis	Hs	biological process
outflow tract morphogenesis	Hs	biological process
endocardial cushion morphogenesis	Hs	biological process
transcription factor complex	Hs	cellular component
Notch signaling pathway	Hs	biological process
muscle cell fate determination	Hs	biological process
cell aging	Hs	biological process
regulation of heart contraction	Hs	biological process
positive regulation of cell proliferation	Hs	biological process
anterior/posterior axis specification, embryo	Hs	biological process
animal organ morphogenesis	Hs	biological process
specification of animal organ position	Hs	biological process
stem cell population maintenance	Hs	biological process
male genitalia development	Hs	biological process
female genitalia development	Hs	biological process
embryonic heart tube development	Hs	biological process
embryonic hindlimb morphogenesis	Hs	biological process
atrioventricular canal development	Hs	biological process
regulation of cell proliferation	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
positive regulation of cell cycle	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
mesoderm morphogenesis	Hs	biological process
embryonic camera-type eye morphogenesis	Hs	biological process
cardiac muscle tissue development	Hs	biological process
palate development	Hs	biological process
pharynx development	Hs	biological process
cellular senescence	Hs	biological process
positive regulation of stem cell proliferation	Hs	biological process

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	248	1.40e-73
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	248	1.40e-73
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	240	1.52e-71
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	251	1.30e-74
RNA polymerase II transcription factor binding	Hs	molecular function	240	1.52e-71
RNA polymerase II activating transcription factor binding	Hs	molecular function	240	1.52e-71
transcriptional repressor activity, RNA polymerase II transcription factor binding	Hs	molecular function	240	1.52e-71
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	248	1.40e-73
DNA binding	Hs	molecular function	251	1.30e-74
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	251	1.30e-74
protein binding	Hs	molecular function	248	1.40e-73
nucleus	Hs	cellular component	251	1.30e-74
nucleoplasm	Hs	cellular component	248	1.40e-73
cytoplasm	Hs	cellular component	248	1.40e-73
transcription factor binding	Hs	molecular function	248	1.40e-73
macromolecular complex	Hs	cellular component	248	1.40e-73
protein-DNA complex	Hs	cellular component	248	1.40e-73
sequence-specific DNA binding	Hs	molecular function	248	1.40e-73

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	3.5E-152
nucleus	PANTHER	cellular component	3.5E-152
regulation of transcription, DNA-templated	PANTHER	biological process	3.5E-152