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GENE CARD

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Gene Card

Best human hits

CHERP; SF3A1; SUGP1

Species

H.aurantium

Unique Gene ID

Haaura.g00004029

Gene Model ID

Haaura.CG.MTP2014.S289.g04029

Location

S289:36478..41929

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
Surp ProSiteProfiles SWAP/Surp
Surp SMART SWAP/Surp
CID_dom ProSiteProfiles CID domain
Surp Pfam SWAP/Surp
SWAP/Surp_sf Gene3D SWAP/Surp superfamily
RNA_pol_II-bd Pfam RNA polymerase II-binding domain
SWAP/Surp_sf SUPERFAMILY SWAP/Surp superfamily
ENTH_VHS Gene3D ENTH/VHS
ENTH_VHS SUPERFAMILY ENTH/VHS
G_patch_dom ProSiteProfiles G-patch domain
G_patch_dom Pfam G-patch domain
G_patch_dom SMART G-patch domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
RNA processing Hs biological process
cellular calcium ion homeostasis Hs biological process
nervous system development Hs biological process
negative regulation of cell proliferation Hs biological process
membrane Hs cellular component
sarcoplasmic reticulum membrane Hs cellular component
ion channel binding Hs molecular function
perinuclear region of cytoplasm Hs cellular component
release of sequestered calcium ion into cytosol Hs biological process
positive regulation of NFAT protein import into nucleus Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 176 2.06e-45
RNA binding Hs molecular function 176 2.06e-45
protein binding Hs molecular function 176 2.06e-45
nucleus Hs cellular component 58.2 1.73e-08
nucleoplasm Hs cellular component 176 2.06e-45
spliceosomal complex Hs cellular component 58.2 1.73e-08
U2-type spliceosomal complex Hs cellular component 58.2 1.73e-08
U2 snRNP Hs cellular component 58.2 1.73e-08
cytoplasm Hs cellular component 176 2.06e-45
endoplasmic reticulum Hs cellular component 176 2.06e-45
membrane Hs cellular component 176 2.06e-45
nuclear speck Hs cellular component 58.2 1.73e-08
sarcoplasmic reticulum membrane Hs cellular component 176 2.06e-45
ion channel binding Hs molecular function 176 2.06e-45
perinuclear region of cytoplasm Hs cellular component 176 2.06e-45
U2-type prespliceosome Hs cellular component 58.2 1.73e-08
catalytic step 2 spliceosome Hs cellular component 58.2 1.73e-08

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 4.5E-13
RNA binding Gene3D molecular function 1.1E-23
RNA processing Gene3D biological process 1.1E-23