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Gene Card

Best human hits

CHRNA1; CHRNA3; CHRNA6

Species

H.roretzi

Unique Gene ID

Harore.g00000031

Gene Model ID

Harore.CG.MTP2014.S201.g00031

Location

S201:151681..156679

Transcript Models and Sequences

  Harore.CG.MTP2014.S201.g00031.01.t
Harore.CG.MTP2014.S201.g00031.02.t
Harore.CG.MTP2014.S201.g00031.03.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Neurotrans-gated_channel_TM Pfam Neurotransmitter-gated ion-channel transmembrane domain
Neur_channel PANTHER Neurotransmitter-gated ion-channel
Neuro-gated_channel_TM_sf SUPERFAMILY Neurotransmitter-gated ion-channel transmembrane domain superfamily
Nicotinic_acetylcholine_rcpt PRINTS Nicotinic acetylcholine receptor
Neurotransmitter_ion_chnl_CS ProSitePatterns Neurotransmitter-gated ion-channel, conserved site
Neur_chan_lig-bd_sf SUPERFAMILY Neurotransmitter-gated ion-channel ligand-binding domain superfamily
Neur_chan_lig-bd_sf Gene3D Neurotransmitter-gated ion-channel ligand-binding domain superfamily
Neur_channel PRINTS Neurotransmitter-gated ion-channel
Neur_chan_lig-bd Pfam Neurotransmitter-gated ion-channel ligand-binding domain

GOSlim

27 results

GO Term Annotation Origin Type
transmembrane signaling receptor activity Blast molecular function
protein binding Blast molecular function
plasma membrane Blast cellular component
ion transport Blast biological process
cation transport Blast biological process
signal transduction Blast biological process
chemical synaptic transmission Blast biological process
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
cell junction Blast cellular component
neuronal cell body Blast cellular component
synapse Blast cellular component
postsynaptic membrane Blast cellular component
transmembrane transport Blast biological process
integral component of plasma membrane Blast cellular component
macromolecular complex Blast cellular component
organelle Blast cellular component
postsynapse Blast cellular component
neuron part Blast cellular component
cation binding Blast molecular function
cell surface receptor signaling pathway Blast biological process
nervous system process Blast biological process
signaling receptor activity Blast molecular function
binding Blast molecular function
membrane raft Blast cellular component
plasma membrane region Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transmembrane signaling receptor activity Hs molecular function 365 1.79e-121
ion channel activity Hs molecular function 365 1.79e-121
extracellular ligand-gated ion channel activity Hs molecular function 365 1.79e-121
protein binding Hs molecular function 347 2.26e-114
plasma membrane Hs cellular component 365 1.79e-121
acetylcholine-gated channel complex Hs cellular component 365 1.79e-121
cell surface Hs cellular component 365 1.79e-121
postsynaptic density Hs cellular component 347 2.26e-114
ligand-gated ion channel activity Hs molecular function 365 1.79e-121
acetylcholine receptor activity Hs molecular function 365 1.79e-121
membrane Hs cellular component 365 1.79e-121
integral component of membrane Hs cellular component 365 1.79e-121
acetylcholine-gated cation-selective channel activity Hs molecular function 365 1.79e-121
serotonin-gated cation-selective channel activity Hs molecular function 347 2.26e-114
cell junction Hs cellular component 365 1.79e-121
dendrite Hs cellular component 347 2.26e-114
neuromuscular junction Hs cellular component 365 1.79e-121
acetylcholine binding Hs molecular function 365 1.79e-121
neuronal cell body Hs cellular component 347 2.26e-114
plasma membrane raft Hs cellular component 347 2.26e-114
synapse Hs cellular component 365 1.79e-121
postsynaptic membrane Hs cellular component 365 1.79e-121

GO (InterProScan)

8 results

GO Term Analysis Type e-value
transmembrane signaling receptor activity PANTHER molecular function 3.2E-120
ion channel activity PANTHER molecular function 3.2E-120
extracellular ligand-gated ion channel activity Gene3D molecular function 1.7E-73
ion transport SUPERFAMILY biological process 1.01E-35
integral component of membrane PANTHER cellular component 3.2E-120
acetylcholine-gated cation-selective channel activity PRINTS molecular function 1.3E-15
ion transmembrane transport PANTHER biological process 3.2E-120
postsynaptic membrane PRINTS cellular component 1.3E-15

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