Aniseed - Gene card

Gene Card

Best human hits

ABCF1; ABCF2; ABCF3

Species

H.roretzi

Unique Gene ID

Harore.g00001044

Gene Model ID

Harore.CG.MTP2014.S30.g01044

Location

S30:413290..419340

Transcript Models and Sequences

Harore.CG.MTP2014.S30.g01044.01.t
Harore.CG.MTP2014.S30.g01044.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
ABC_tran_Xtn	Pfam	ABC-transporter extension domain
ABC_transporter-like	ProSiteProfiles	ABC transporter-like
ABC_transporter_CS	ProSitePatterns	ABC transporter, conserved site
AAA+_ATPase	SMART	AAA+ ATPase domain
ABC_transporter-like	Pfam	ABC transporter-like

GOSlim

18 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
ATP binding	Orthology	molecular function
nucleus	Blast	cellular component
nuclear envelope	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
mitochondrial envelope	Orthology	cellular component
cytosol	Blast	cellular component
ribosome	Blast	cellular component
membrane	Orthology	cellular component
nucleoside-triphosphatase activity	Orthology	molecular function
plasma membrane part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
integral component of membrane	Orthology	cellular component
regulation of gene expression	Blast	biological process
cell adhesion molecule binding	Blast	molecular function

GO (Orthology)

7 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
transporter activity	Hs	molecular function
ATP binding	Hs	molecular function
mitochondrial envelope	Hs	cellular component
membrane	Hs	cellular component
ATPase activity	Hs	molecular function
ATP-binding cassette (ABC) transporter complex	Hs	cellular component

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	851	0.0
RNA binding	Hs	molecular function	363	3.92e-114
transporter activity	Hs	molecular function	851	0.0
protein binding	Hs	molecular function	416	1.27e-135
ATP binding	Hs	molecular function	851	0.0
nucleus	Hs	cellular component	363	3.92e-114
nuclear envelope	Hs	cellular component	363	3.92e-114
nucleoplasm	Hs	cellular component	363	3.92e-114
cytoplasm	Hs	cellular component	363	3.92e-114
mitochondrial envelope	Hs	cellular component	851	0.0
cytosol	Hs	cellular component	363	3.92e-114
ribosome	Hs	cellular component	363	3.92e-114
translation factor activity, RNA binding	Hs	molecular function	363	3.92e-114
membrane	Hs	cellular component	851	0.0
ATPase activity	Hs	molecular function	851	0.0
ATP-binding cassette (ABC) transporter complex	Hs	cellular component	851	0.0
cadherin binding	Hs	molecular function	416	1.27e-135

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
ATP binding	Pfam	molecular function	1.3E-21
ATPase activity	Pfam	molecular function	1.3E-21