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  2. Gene 'Harore.CG.MTP2014.S1...'

Gene Card

Best human hits

DHX16; DHX8

Species

H.roretzi

Unique Gene ID

Harore.g00001789

Gene Model ID

Harore.CG.MTP2014.S175.g01789

Location

S175:73344..89011

Transcript Models and Sequences

  Harore.CG.MTP2014.S175.g01789.01.t

External Database Gene Card

External database links

No result

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Genomicus Synteny Browser

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Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

17 results

IPR Term Analysis Definition
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C CDD Helicase, C-terminal
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
S1_domain Pfam S1 domain
Helicase-assoc_dom SMART Helicase-associated domain
Helicase_C ProSiteProfiles Helicase, C-terminal
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
S1_domain ProSiteProfiles S1 domain
Helicase_C Pfam Helicase, C-terminal
SNU66/SART1 Pfam SNU66/SART1 family
S1_dom SMART RNA-binding domain, S1
Helicase_C SMART Helicase, C-terminal
DUF1605 Pfam Domain of unknown function DUF1605
Helicase-assoc_dom Pfam Helicase-associated domain
DNA/RNA_helicase_DEAH_CS ProSitePatterns DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site

GOSlim

18 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
RNA processing Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear body Orthology cellular component
hydrolase activity Orthology molecular function
identical protein binding Orthology molecular function
nucleoside-triphosphatase activity Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
RNA processing Hs biological process
mRNA processing Hs biological process
RNA splicing Hs biological process
nuclear body Hs cellular component
hydrolase activity Hs molecular function
identical protein binding Hs molecular function
U2-type catalytic step 2 spliceosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 1651 0.0
nucleic acid binding Hs molecular function 1651 0.0
RNA binding Hs molecular function 1651 0.0
RNA helicase activity Hs molecular function 759 0.0
ATP-dependent RNA helicase activity Hs molecular function 1651 0.0
helicase activity Hs molecular function 1651 0.0
protein binding Hs molecular function 1651 0.0
ATP binding Hs molecular function 1651 0.0
nucleus Hs cellular component 1651 0.0
nucleoplasm Hs cellular component 1651 0.0
spliceosomal complex Hs cellular component 1651 0.0
cytoplasm Hs cellular component 1651 0.0
nuclear body Hs cellular component 1651 0.0
hydrolase activity Hs molecular function 1651 0.0
ATPase activity Hs molecular function 759 0.0
identical protein binding Hs molecular function 1651 0.0
U2-type catalytic step 2 spliceosome Hs cellular component 1651 0.0
catalytic step 2 spliceosome Hs cellular component 1651 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
mRNA splicing, via spliceosome Pfam biological process 5.9E-128
nucleic acid binding Pfam molecular function 6.8E-14
helicase activity SMART molecular function 7.8E-39
ATP binding Pfam molecular function 6.7E-7

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