Aniseed - Gene card

Gene Card

Best human hits

TBR1; TBX19; TBXT

Species

H.roretzi

Unique Gene ID

Harore.g00007916

Gene Model ID

Harore.CG.MTP2014.S42.g07916

Location

S42:246314..250245

Transcript Models and Sequences

Harore.CG.MTP2014.S42.g07916.01.t
Harore.CG.MTP2014.S42.g07916.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
TF_Brachyury	PRINTS	Transcription factor, Brachyury
TF_T-box	ProSiteProfiles	Transcription factor, T-box
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding
TF_T-box	PRINTS	Transcription factor, T-box
TF_T-box	SMART	Transcription factor, T-box
TF_T-box	PANTHER	Transcription factor, T-box
TF_T-box	Pfam	Transcription factor, T-box
T-box_sf	Gene3D	T-box superfamily
TF_T-box	CDD	Transcription factor, T-box
TF_T-box_CS	ProSitePatterns	Transcription factor, T-box, conserved site

GOSlim

15 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
nucleus	Blast	cellular component
cytoplasm	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
protein kinase binding	Blast	molecular function
sequence-specific DNA binding	Blast	molecular function
intracellular organelle part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear lumen	Blast	cellular component
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
transcription factor binding	Blast	molecular function
transcription regulatory region sequence-specific DNA binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromatin	Hs	cellular component	318	1.19e-103
nuclear chromatin	Hs	cellular component	318	1.19e-103
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	318	1.19e-103
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	318	1.19e-103
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	318	1.19e-103
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	300	2.22e-96
RNA polymerase II transcription factor binding	Hs	molecular function	318	1.19e-103
RNA polymerase II activating transcription factor binding	Hs	molecular function	318	1.19e-103
enhancer sequence-specific DNA binding	Hs	molecular function	300	2.22e-96
transcriptional repressor activity, RNA polymerase II transcription factor binding	Hs	molecular function	318	1.19e-103
DNA binding	Hs	molecular function	318	1.19e-103
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	318	1.19e-103
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	318	1.19e-103
nucleus	Hs	cellular component	318	1.19e-103
cytoplasm	Hs	cellular component	318	1.19e-103
protein kinase binding	Hs	molecular function	207	7.56e-59
sequence-specific DNA binding	Hs	molecular function	318	1.19e-103

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	3.2E-129
nucleus	PANTHER	cellular component	3.2E-129
regulation of transcription, DNA-templated	PANTHER	biological process	3.2E-129