Aniseed - Gene card

Gene Card

Best human hits

RPS3

Species

M.oculata

Unique Gene ID

Moocul.g00013551

Gene Model ID

Moocul.CG.ELv1_2.S114620.g13551

Location

S114620:68598..72944

Transcript Models and Sequences

Moocul.CG.ELv1_2.S114620.g13551.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
Ribosomal_S3_C_sf	Gene3D	Ribosomal protein S3, C-terminal domain superfamily
KH_dom_type_2	ProSiteProfiles	K Homology domain, type 2
KH_sf_prok-type	SUPERFAMILY	K homology domain superfamily, prokaryotic type
Ribosomal_S3_C	Pfam	Ribosomal protein S3, C-terminal
Ribosomal_S3_euk/arc	TIGRFAM	Ribosomal protein S3, eukaryotic/archaeal
Ribosomal_S3_CS	ProSitePatterns	Ribosomal protein S3, conserved site
Ribosomal_S3_C_sf	SUPERFAMILY	Ribosomal protein S3, C-terminal domain superfamily
KH_dom_type_2	Pfam	K Homology domain, type 2
KH_dom-like_a/b	Gene3D	K homology domain-like, alpha/beta

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

84 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
cytoplasmic translation	Hs	biological process
DNA binding	Hs	molecular function
damaged DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
endodeoxyribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial matrix	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
spindle	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
polysome	Hs	cellular component
cytoskeleton	Hs	cellular component
plasma membrane	Hs	cellular component
focal adhesion	Hs	cellular component
DNA repair	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
regulation of translation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
apoptotic process	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
response to oxidative stress	Hs	biological process
cell cycle	Hs	biological process
chromosome segregation	Hs	biological process
microtubule binding	Hs	molecular function
transcription factor binding	Hs	molecular function
positive regulation of gene expression	Hs	biological process
tubulin binding	Hs	molecular function
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
lyase activity	Hs	molecular function
negative regulation of translation	Hs	biological process
enzyme binding	Hs	molecular function
kinase binding	Hs	molecular function
protein kinase binding	Hs	molecular function
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
Hsp70 protein binding	Hs	molecular function
positive regulation of microtubule polymerization	Hs	biological process
positive regulation of protein complex assembly	Hs	biological process
negative regulation of protein ubiquitination	Hs	biological process
oxidized purine DNA binding	Hs	molecular function
oxidized pyrimidine DNA binding	Hs	molecular function
ruffle membrane	Hs	cellular component
DNA damage response, detection of DNA damage	Hs	biological process
regulation of apoptotic process	Hs	biological process
positive regulation of JUN kinase activity	Hs	biological process
ubiquitin-like protein conjugating enzyme binding	Hs	molecular function
macromolecular complex binding	Hs	molecular function
positive regulation of DNA repair	Hs	biological process
positive regulation of T cell receptor signaling pathway	Hs	biological process
protein kinase A binding	Hs	molecular function
positive regulation of NF-kappaB transcription factor activity	Hs	biological process
spindle assembly	Hs	biological process
cell division	Hs	biological process
iron-sulfur cluster binding	Hs	molecular function
Hsp90 protein binding	Hs	molecular function
extracellular exosome	Hs	cellular component
small ribosomal subunit rRNA binding	Hs	molecular function
cellular response to hydrogen peroxide	Hs	biological process
NF-kappaB complex	Hs	cellular component
cellular response to tumor necrosis factor	Hs	biological process
mitotic spindle	Hs	cellular component
supercoiled DNA binding	Hs	molecular function
class I DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
class III/IV DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage	Hs	biological process
positive regulation of apoptotic signaling pathway	Hs	biological process
positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis	Hs	biological process

GO (Blast)

51 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	387	2.59e-137
DNA binding	Hs	molecular function	387	2.59e-137
damaged DNA binding	Hs	molecular function	387	2.59e-137
RNA binding	Hs	molecular function	387	2.59e-137
mRNA binding	Hs	molecular function	387	2.59e-137
structural constituent of ribosome	Hs	molecular function	387	2.59e-137
DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	387	2.59e-137
endodeoxyribonuclease activity	Hs	molecular function	387	2.59e-137
protein binding	Hs	molecular function	387	2.59e-137
nucleus	Hs	cellular component	387	2.59e-137
nucleoplasm	Hs	cellular component	387	2.59e-137
nucleolus	Hs	cellular component	387	2.59e-137
cytoplasm	Hs	cellular component	387	2.59e-137
mitochondrion	Hs	cellular component	387	2.59e-137
mitochondrial inner membrane	Hs	cellular component	387	2.59e-137
mitochondrial matrix	Hs	cellular component	387	2.59e-137
endoplasmic reticulum	Hs	cellular component	387	2.59e-137
spindle	Hs	cellular component	387	2.59e-137
cytosol	Hs	cellular component	387	2.59e-137
ribosome	Hs	cellular component	387	2.59e-137
polysome	Hs	cellular component	387	2.59e-137
cytoskeleton	Hs	cellular component	387	2.59e-137
plasma membrane	Hs	cellular component	387	2.59e-137
focal adhesion	Hs	cellular component	387	2.59e-137
microtubule binding	Hs	molecular function	387	2.59e-137
transcription factor binding	Hs	molecular function	387	2.59e-137
tubulin binding	Hs	molecular function	387	2.59e-137
small ribosomal subunit	Hs	cellular component	387	2.59e-137
membrane	Hs	cellular component	387	2.59e-137
lyase activity	Hs	molecular function	387	2.59e-137
enzyme binding	Hs	molecular function	387	2.59e-137
kinase binding	Hs	molecular function	387	2.59e-137
protein kinase binding	Hs	molecular function	387	2.59e-137
cytosolic small ribosomal subunit	Hs	cellular component	387	2.59e-137
intracellular ribonucleoprotein complex	Hs	cellular component	387	2.59e-137
Hsp70 protein binding	Hs	molecular function	387	2.59e-137
oxidized purine DNA binding	Hs	molecular function	387	2.59e-137
oxidized pyrimidine DNA binding	Hs	molecular function	387	2.59e-137
ruffle membrane	Hs	cellular component	387	2.59e-137
ubiquitin-like protein conjugating enzyme binding	Hs	molecular function	387	2.59e-137
macromolecular complex binding	Hs	molecular function	387	2.59e-137
protein kinase A binding	Hs	molecular function	387	2.59e-137
iron-sulfur cluster binding	Hs	molecular function	387	2.59e-137
Hsp90 protein binding	Hs	molecular function	387	2.59e-137
extracellular exosome	Hs	cellular component	387	2.59e-137
small ribosomal subunit rRNA binding	Hs	molecular function	387	2.59e-137
NF-kappaB complex	Hs	cellular component	387	2.59e-137
mitotic spindle	Hs	cellular component	387	2.59e-137
supercoiled DNA binding	Hs	molecular function	387	2.59e-137
class I DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	387	2.59e-137
class III/IV DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	387	2.59e-137

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
RNA binding	SUPERFAMILY	molecular function	7.41E-26
structural constituent of ribosome	TIGRFAM	molecular function	6.2E-72
ribosome	Gene3D	cellular component	3.0E-71
translation	TIGRFAM	biological process	6.2E-72
small ribosomal subunit	TIGRFAM	cellular component	6.2E-72