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Gene Card

Best human hits

TCEA1; TCEA2; TCEA3

Species

P.fumigata

Unique Gene ID

Phfumi.g00000405

Gene Model ID

Phfumi.CG.MTP2014.S23.g00405

Location

S23:67427..69273

Transcript Models and Sequences

  Phfumi.CG.MTP2014.S23.g00405.01.t
Phfumi.CG.MTP2014.S23.g00405.02.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
TFIIS/LEDGF_dom_sf Gene3D TFIIS/LEDGF domain superfamily
TFIIS/CRSP70_N_sub SMART Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
TFIIS_cen_dom SMART Transcription elongation factor S-II, central domain
TFIIS_cen_dom_sf SUPERFAMILY Transcription elongation factor S-II, central domain superfamily
TFIIS_cen_dom ProSiteProfiles Transcription elongation factor S-II, central domain
TFIIS_cen_dom_sf Gene3D Transcription elongation factor S-II, central domain superfamily
TFSII TIGRFAM Transcription elongation factor, TFIIS
TFIIS/LEDGF_dom_sf SUPERFAMILY TFIIS/LEDGF domain superfamily
TF_IIS-typ PIRSF Transcription elongation factor, IIS-type
TFIIS_N ProSiteProfiles Transcription factor IIS, N-terminal
TFIIS_N Pfam Transcription factor IIS, N-terminal
TFIIS_cen_dom Pfam Transcription elongation factor S-II, central domain

GOSlim

17 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
zinc ion binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
RNA binding Orthology molecular function
regulation of gene expression Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
DNA repair Orthology biological process

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
translation elongation factor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor TFIID complex Hs cellular component
nucleolus Hs cellular component
transcription-coupled nucleotide-excision repair Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
translational elongation Hs biological process
transcription elongation factor complex Hs cellular component
zinc ion binding Hs molecular function
regulation of DNA-templated transcription, elongation Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 246 3.87e-81
DNA binding Hs molecular function 246 3.87e-81
translation elongation factor activity Hs molecular function 246 3.87e-81
protein binding Hs molecular function 246 3.87e-81
nucleus Hs cellular component 246 3.87e-81
nucleoplasm Hs cellular component 229 1.02e-74
transcription factor TFIID complex Hs cellular component 229 1.02e-74
nucleolus Hs cellular component 229 1.02e-74
transcription elongation factor complex Hs cellular component 246 3.87e-81
zinc ion binding Hs molecular function 246 3.87e-81
metal ion binding Hs molecular function 246 3.87e-81

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding TIGRFAM molecular function 9.1E-72
nucleus Pfam cellular component 8.1E-12
transcription, DNA-templated Pfam biological process 5.0E-37
regulation of transcription, DNA-templated TIGRFAM biological process 9.1E-72

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