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Gene Card

Best human hits

FERD3L; HAND2; PTF1A

Species

P.mammillata

Unique Gene ID

Phmamm.g00000081

Gene Model ID

Phmamm.CG.MTP2014.S2.g00081

Location

S2:252695..255380

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S2.g00081.01.t
Phmamm.CG.MTP2014.S2.g00081.02.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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No Phylogeny Tree for this Gene.
Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
bHLH_dom Pfam Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom CDD Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily
bHLH_dom SMART Myc-type, basic helix-loop-helix (bHLH) domain

GOSlim

22 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Blast biological process
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription coactivator activity Blast molecular function
protein binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
cytoplasm Blast cellular component
transcription factor binding Blast molecular function
macromolecular complex Blast cellular component
protein homodimerization activity Blast molecular function
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
protein heterodimerization activity Blast molecular function
protein dimerization activity Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
sequence-specific double-stranded DNA binding Blast molecular function
intracellular part Blast cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 66.2 1.10e-12
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 75.1 2.69e-16
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 76.6 9.05e-16
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 76.6 9.05e-16
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 76.6 9.05e-16
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 75.1 2.69e-16
DNA binding Hs molecular function 76.6 9.05e-16
AT DNA binding Hs molecular function 66.2 1.10e-12
chromatin binding Hs molecular function 76.6 9.05e-16
transcription coactivator activity Hs molecular function 66.2 1.10e-12
protein binding Hs molecular function 75.1 2.69e-16
intracellular Hs cellular component 76.6 9.05e-16
nucleus Hs cellular component 76.6 9.05e-16
transcription factor complex Hs cellular component 76.6 9.05e-16
cytoplasm Hs cellular component 76.6 9.05e-16
transcription factor binding Hs molecular function 66.2 1.10e-12
macromolecular complex Hs cellular component 66.2 1.10e-12
activating transcription factor binding Hs molecular function 66.2 1.10e-12
protein homodimerization activity Hs molecular function 66.2 1.10e-12
sequence-specific DNA binding Hs molecular function 76.6 9.05e-16
transcription regulatory region DNA binding Hs molecular function 66.2 1.10e-12
protein heterodimerization activity Hs molecular function 66.2 1.10e-12
protein dimerization activity Hs molecular function 76.6 9.05e-16
E-box binding Hs molecular function 76.6 9.05e-16

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein dimerization activity Gene3D molecular function 1.4E-23

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