Aniseed - Gene card

Gene Card

Best human hits

CHD2; CHD3; CHD5

Species

P.mammillata

Unique Gene ID

Phmamm.g00000492

Gene Model ID

Phmamm.CG.MTP2014.S12.g00492

Location

S12:31380..54640

Transcript Models and Sequences

Phmamm.CG.MTP2014.S12.g00492.01.t
Phmamm.CG.MTP2014.S12.g00492.02.t
Phmamm.CG.MTP2014.S12.g00492.03.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

133 results

AHC0AAA254YP22

Plate: Plate_254_P22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

29 results

IPR Term	Analysis	Definition
Chromo-like_dom_sf	SUPERFAMILY	Chromo-like domain superfamily
CHD_N	Pfam	CHD, N-terminal
DUF1086	Pfam	Domain of unknown function DUF1086
Chromo/chromo_shadow_dom	ProSiteProfiles	Chromo/chromo shadow domain
Znf_FYVE_PHD	SUPERFAMILY	Zinc finger, FYVE/PHD-type
Znf_PHD-finger	ProSiteProfiles	Zinc finger, PHD-finger
Znf_PHD	SMART	Zinc finger, PHD-type
SNF2_N	Pfam	SNF2-related, N-terminal domain
DUF1086	SMART	Domain of unknown function DUF1086
Chromo/chromo_shadow_dom	CDD	Chromo/chromo shadow domain
Znf_RING	SMART	Zinc finger, RING-type
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Helicase_C	ProSiteProfiles	Helicase, C-terminal
Helicase_C	CDD	Helicase, C-terminal
Znf_RING	ProSiteProfiles	Zinc finger, RING-type
Helicase_C	Pfam	Helicase, C-terminal
DUF1087	Pfam	Domain of unknown function DUF1087
Znf_PHD-finger	Pfam	Zinc finger, PHD-finger
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
CHD_C2	Pfam	CHD, C-terminal 2
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
Zinc_finger_PHD-type_CS	ProSitePatterns	Zinc finger, PHD-type, conserved site
Chromo/chromo_shadow_dom	SMART	Chromo/chromo shadow domain
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
SNF2-like_sf	Gene3D	SNF2-like, N-terminal domain superfamily
DUF1087	SMART	Domain of unknown function DUF1087
Chromo_domain	Pfam	Chromo domain
Helicase_C	SMART	Helicase, C-terminal
CHD3	PANTHER	Chromodomain-helicase-DNA-binding protein 3

GOSlim

48 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
centrosome	Orthology	cellular component
microtubule organizing center	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
spermatogenesis	Orthology	biological process
nervous system development	Orthology	biological process
zinc ion binding	Orthology	molecular function
negative regulation of cell proliferation	Orthology	biological process
membrane	Orthology	cellular component
nuclear speck	Orthology	cellular component
hydrolase activity	Orthology	molecular function
cell differentiation	Orthology	biological process
intracellular membrane-bounded organelle	Blast	cellular component
metal ion binding	Orthology	molecular function
extracellular exosome	Blast	cellular component
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
transcription factor binding	Orthology	molecular function
macromolecular complex	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
organelle organization	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
cellular protein modification process	Orthology	biological process
microtubule-based process	Orthology	biological process
nucleoplasm part	Orthology	cellular component
brain development	Orthology	biological process
neuron differentiation	Orthology	biological process
cell development	Orthology	biological process
nuclear lumen	Orthology	cellular component
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
macromolecular complex binding	Orthology	molecular function
enzyme binding	Orthology	molecular function
cellular component organization	Orthology	biological process
transcription regulatory region sequence-specific DNA binding	Blast	molecular function

GO (Orthology)

53 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
heterochromatin	Hs	cellular component
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
ATP-dependent DNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
histone deacetylase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
centrosome	Hs	cellular component
microtubule organizing center	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
chromatin organization	Hs	biological process
chromatin assembly or disassembly	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
spindle organization	Hs	biological process
centrosome cycle	Hs	biological process
spermatogenesis	Hs	biological process
nervous system development	Hs	biological process
zinc ion binding	Hs	molecular function
negative regulation of cell proliferation	Hs	biological process
membrane	Hs	cellular component
histone deacetylation	Hs	biological process
NuRD complex	Hs	cellular component
nuclear speck	Hs	cellular component
hydrolase activity	Hs	molecular function
cerebral cortex neuron differentiation	Hs	biological process
cell differentiation	Hs	biological process
DNA duplex unwinding	Hs	biological process
spermatogenesis, exchange of chromosomal proteins	Hs	biological process
ATP-dependent chromatin remodeling	Hs	biological process
histone H4 acetylation	Hs	biological process
metal ion binding	Hs	molecular function
H3K27me3 modified histone binding	Hs	molecular function
histone H3-K27 trimethylation	Hs	biological process
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
nuclear chromatin	Hs	cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function
RNA polymerase II repressing transcription factor binding	Hs	molecular function
transcription factor binding	Hs	molecular function
nucleosomal DNA binding	Hs	molecular function
macromolecular complex	Hs	cellular component
protein-DNA complex	Hs	cellular component
histone deacetylase binding	Hs	molecular function
terminal button organization	Hs	biological process

GO (Blast)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	1825	0.0
heterochromatin	Hs	cellular component	1776	0.0
core promoter sequence-specific DNA binding	Hs	molecular function	532	9.30e-158
DNA binding	Hs	molecular function	1825	0.0
RNA binding	Hs	molecular function	1825	0.0
ATP-dependent DNA helicase activity	Hs	molecular function	1825	0.0
helicase activity	Hs	molecular function	1825	0.0
histone deacetylase activity	Hs	molecular function	1825	0.0
protein binding	Hs	molecular function	1825	0.0
ATP binding	Hs	molecular function	1825	0.0
nucleus	Hs	cellular component	1825	0.0
nucleoplasm	Hs	cellular component	1825	0.0
nucleolus	Hs	cellular component	1825	0.0
cytoplasm	Hs	cellular component	1825	0.0
centrosome	Hs	cellular component	1825	0.0
microtubule organizing center	Hs	cellular component	1825	0.0
cytosol	Hs	cellular component	1776	0.0
cytoskeleton	Hs	cellular component	1825	0.0
zinc ion binding	Hs	molecular function	1825	0.0
membrane	Hs	cellular component	1776	0.0
NuRD complex	Hs	cellular component	1825	0.0
nuclear speck	Hs	cellular component	1776	0.0
hydrolase activity	Hs	molecular function	1825	0.0
histone binding	Hs	molecular function	532	9.30e-158
intracellular membrane-bounded organelle	Hs	cellular component	532	9.30e-158
metal ion binding	Hs	molecular function	1825	0.0
H3K27me3 modified histone binding	Hs	molecular function	1776	0.0
extracellular exosome	Hs	cellular component	532	9.30e-158

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
ATP binding	Pfam	molecular function	5.1E-60
chromatin organization	PANTHER	biological process	0.0
spindle organization	PANTHER	biological process	0.0
centrosome cycle	PANTHER	biological process	0.0
NuRD complex	PANTHER	cellular component	0.0