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GENE CARD

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Gene Card

Best human hits

AFG3L2; SPG7; YME1L1

Species

P.mammillata

Unique Gene ID

Phmamm.g00000787

Gene Model ID

Phmamm.CG.MTP2014.S19.g00787

Location

S19:92836..106137

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

22 results

AHC0AAA29YA19

Plate: Plate_29_A19

AHC0AAA48YG09

Plate: Plate_48_G09

AHC0AAA50YL21

Plate: Plate_50_L21

AHC0AAA55YI05

Plate: Plate_55_I05

AHC0AAA72YL04

Plate: Plate_72_L04

AHC0AAA75YJ10

Plate: Plate_75_J10

AHC0AAA106YH10

Plate: Plate_106_H10

AHC0AAA107YJ03

Plate: Plate_107_J03

AHC0AAA116YH21

Plate: Plate_116_H21

AHC0AAA117YM12

Plate: Plate_117_M12

AHC0AAA134YH16

Plate: Plate_134_H16

AHC0AAA149YI18

Plate: Plate_149_I18

AHC0AAA81YL23

Plate: Plate_81_L23

AHC0AAA93YM03

Plate: Plate_93_M03

AHC0AAA106YJ12

Plate: Plate_106_J12

AHC0AAA179YM11

Plate: Plate_179_M11

AHC0AAA194YK10

Plate: Plate_194_K10

AHC0AAA212YE19

Plate: Plate_212_E19

AHC0AAA212YO15

Plate: Plate_212_O15

AHC0AAA229YB21

Plate: Plate_229_B21

AHC0AAA253YL14

Plate: Plate_253_L14

AHC0AAA55YK07

Plate: Plate_55_K07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Pept_M41_FtsH_extracell Pfam Peptidase M41, FtsH extracellular
ATPase_AAA_core Pfam ATPase, AAA-type, core
AAA+_ATPase SMART AAA+ ATPase domain
FtsH Hamap Peptidase, FtsH
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
FtsH TIGRFAM Peptidase, FtsH
Peptidase_M41 Pfam Peptidase M41
Peptidase_M41-like SUPERFAMILY Peptidase M41-like
ATPase_AAA_CS ProSitePatterns ATPase, AAA-type, conserved site

GOSlim

34 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
metalloendopeptidase activity Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
mitochondrion Orthology cellular component
mitochondrial inner membrane Orthology cellular component
proteolysis Orthology biological process
nervous system development Orthology biological process
axonogenesis Orthology biological process
peptidase activity Orthology molecular function
metallopeptidase activity Orthology molecular function
zinc ion binding Orthology molecular function
membrane Orthology cellular component
integral component of membrane Orthology cellular component
nuclear body Blast cellular component
hydrolase activity Orthology molecular function
metal ion binding Orthology molecular function
unfolded protein binding Orthology molecular function
macromolecular complex Orthology cellular component
metal ion transport Orthology biological process
transmembrane transport Orthology biological process
organelle organization Orthology biological process
cellular component organization Orthology biological process
gene expression Orthology biological process
developmental process Orthology biological process
membrane organization Orthology biological process
cellular process Orthology biological process
cell development Orthology biological process
peptidase activity, acting on L-amino acid peptides Blast molecular function
nucleoside-triphosphatase activity Blast molecular function
mitochondrial envelope Blast cellular component
cytoplasmic part Blast cellular component
cell projection part Blast cellular component
axon Blast cellular component

GO (Orthology)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
metalloendopeptidase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
mitochondrion Hs cellular component
mitochondrial inner membrane Hs cellular component
m-AAA complex Hs cellular component
proteolysis Hs biological process
mitochondrial calcium ion transmembrane transport Hs biological process
mitochondrion organization Hs biological process
axonogenesis Hs biological process
neuromuscular junction development Hs biological process
mitochondrial fusion Hs biological process
peptidase activity Hs molecular function
metallopeptidase activity Hs molecular function
zinc ion binding Hs molecular function
membrane Hs cellular component
integral component of membrane Hs cellular component
protein processing Hs biological process
protein autoprocessing Hs biological process
hydrolase activity Hs molecular function
mitochondrial calcium uptake Hs biological process
regulation of multicellular organism growth Hs biological process
cristae formation Hs biological process
myelination Hs biological process
metal ion binding Hs molecular function
muscle fiber development Hs biological process
unfolded protein binding Hs molecular function
mitochondrial calcium ion homeostasis Hs biological process

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 784 0.0
ATP-dependent peptidase activity Hs molecular function 345 2.80e-108
metalloendopeptidase activity Hs molecular function 784 0.0
protein binding Hs molecular function 784 0.0
ATP binding Hs molecular function 784 0.0
mitochondrion Hs cellular component 784 0.0
mitochondrial inner membrane Hs cellular component 784 0.0
m-AAA complex Hs cellular component 784 0.0
mitochondrial permeability transition pore complex Hs cellular component 499 1.56e-167
peptidase activity Hs molecular function 784 0.0
metallopeptidase activity Hs molecular function 784 0.0
zinc ion binding Hs molecular function 784 0.0
membrane Hs cellular component 784 0.0
integral component of membrane Hs cellular component 784 0.0
nuclear body Hs cellular component 345 2.80e-108
hydrolase activity Hs molecular function 784 0.0
metal ion binding Hs molecular function 784 0.0
unfolded protein binding Hs molecular function 784 0.0
axon cytoplasm Hs cellular component 499 1.56e-167

GO (InterProScan)

6 results

GO Term Analysis Type e-value
metalloendopeptidase activity TIGRFAM molecular function 5.4E-195
ATP binding SUPERFAMILY molecular function 1.15E-63
proteolysis SUPERFAMILY biological process 1.15E-63
zinc ion binding Pfam molecular function 1.1E-5
membrane TIGRFAM cellular component 5.4E-195
integral component of membrane Pfam cellular component 1.1E-5