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GENE CARD

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Gene Card

Best human hits

PGAM5; SNRPA; SNRPB2

Species

P.mammillata

Unique Gene ID

Phmamm.g00000789

Gene Model ID

Phmamm.CG.MTP2014.S19.g00789

Location

S19:112380..115801

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S19.g00789.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

90 results

AHC0AAA10YF10

Plate: Plate_10_F10

AHC0AAA10YF19

Plate: Plate_10_F19

AHC0AAA14YG18

Plate: Plate_14_G18

AHC0AAA18YH11

Plate: Plate_18_H11

AHC0AAA2YH13

Plate: Plate_2_H13

AHC0AAA24YL14

Plate: Plate_24_L14

AHC0AAA3YI05

Plate: Plate_3_I05

AHC0AAA6YJ03

Plate: Plate_6_J03

AHC0AAA33YE03

Plate: Plate_33_E03

AHC0AAA37YC06

Plate: Plate_37_C06

AHC0AAA37YK16

Plate: Plate_37_K16

AHC0AAA50YP06

Plate: Plate_50_P06

AHC0AAA51YJ10

Plate: Plate_51_J10

AHC0AAA51YO14

Plate: Plate_51_O14

AHC0AAA58YK19

Plate: Plate_58_K19

AHC0AAA61YP24

Plate: Plate_61_P24

AHC0AAA67YD21

Plate: Plate_67_D21

AHC0AAA72YH10

Plate: Plate_72_H10

AHC0AAA74YD07

Plate: Plate_74_D07

AHC0AAA74YI14

Plate: Plate_74_I14

AHC0AAA79YB21

Plate: Plate_79_B21

AHC0AAA101YG11

Plate: Plate_101_G11

AHC0AAA102YH05

Plate: Plate_102_H05

AHC0AAA102YH09

Plate: Plate_102_H09

AHC0AAA104YI17

Plate: Plate_104_I17

AHC0AAA107YM24

Plate: Plate_107_M24

AHC0AAA117YN18

Plate: Plate_117_N18

AHC0AAA119YM24

Plate: Plate_119_M24

AHC0AAA124YB05

Plate: Plate_124_B05

AHC0AAA124YJ08

Plate: Plate_124_J08

AHC0AAA127YN07

Plate: Plate_127_N07

AHC0AAA133YE16

Plate: Plate_133_E16

AHC0AAA133YK18

Plate: Plate_133_K18

AHC0AAA133YM05

Plate: Plate_133_M05

AHC0AAA135YC11

Plate: Plate_135_C11

AHC0AAA138YP18

Plate: Plate_138_P18

AHC0AAA140YN03

Plate: Plate_140_N03

AHC0AAA141YD22

Plate: Plate_141_D22

AHC0AAA141YG09

Plate: Plate_141_G09

AHC0AAA145YO10

Plate: Plate_145_O10

AHC0AAA147YD03

Plate: Plate_147_D03

AHC0AAA154YK08

Plate: Plate_154_K08

AHC0AAA81YG15

Plate: Plate_81_G15

AHC0AAA82YI23

Plate: Plate_82_I23

AHC0AAA91YN09

Plate: Plate_91_N09

AHC0AAA156YK10

Plate: Plate_156_K10

AHC0AAA98YO08

Plate: Plate_98_O08

AHC0AAA133YE14

Plate: Plate_133_E14

AHC0AAA95YM05

Plate: Plate_95_M05

AHC0AAA147YD01

Plate: Plate_147_D01

AHC0AAA133YM20

Plate: Plate_133_M20

AHC0AAA158YP21

Plate: Plate_158_P21

AHC0AAA133YO07

Plate: Plate_133_O07

AHC0AAA159YA04

Plate: Plate_159_A04

AHC0AAA165YM09

Plate: Plate_165_M09

AHC0AAA168YH07

Plate: Plate_168_H07

AHC0AAA166YF12

Plate: Plate_166_F12

AHC0AAA173YO24

Plate: Plate_173_O24

AHC0AAA173YC07

Plate: Plate_173_C07

AHC0AAA178YN18

Plate: Plate_178_N18

AHC0AAA176YK24

Plate: Plate_176_K24

AHC0AAA183YJ04

Plate: Plate_183_J04

AHC0AAA181YG09

Plate: Plate_181_G09

AHC0AAA192YL02

Plate: Plate_192_L02

AHC0AAA198YC10

Plate: Plate_198_C10

AHC0AAA188YB06

Plate: Plate_188_B06

AHC0AAA200YO09

Plate: Plate_200_O09

AHC0AAA207YL09

Plate: Plate_207_L09

AHC0AAA202YO11

Plate: Plate_202_O11

AHC0AAA211YE02

Plate: Plate_211_E02

AHC0AAA208YM14

Plate: Plate_208_M14

AHC0AAA219YE04

Plate: Plate_219_E04

AHC0AAA215YD21

Plate: Plate_215_D21

AHC0AAA219YK13

Plate: Plate_219_K13

AHC0AAA219YI04

Plate: Plate_219_I04

AHC0AAA219YP21

Plate: Plate_219_P21

AHC0AAA222YI22

Plate: Plate_222_I22

AHC0AAA233YM05

Plate: Plate_233_M05

AHC0AAA227YM02

Plate: Plate_227_M02

AHC0AAA241YM14

Plate: Plate_241_M14

AHC0AAA242YB16

Plate: Plate_242_B16

AHC0AAA239YG03

Plate: Plate_239_G03

AHC0AAA253YH12

Plate: Plate_253_H12

AHC0AAA249YO11

Plate: Plate_249_O11

AHC0AAA264YL09

Plate: Plate_264_L09

AHC0AAA264YO07

Plate: Plate_264_O07

AHC0AAA255YG17

Plate: Plate_255_G17

AHC0AAA269YM16

Plate: Plate_269_M16

AHC0AAA267YG11

Plate: Plate_267_G11

AHC0AAA98YO06

Plate: Plate_98_O06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
RRM_dom ProSiteProfiles RNA recognition motif domain
RRM_dom Pfam RNA recognition motif domain
His_PPase_superfam SUPERFAMILY Histidine phosphatase superfamily
His_PPase_superfam Gene3D Histidine phosphatase superfamily
RRM_dom SMART RNA recognition motif domain
His_Pase_superF_clade-1 CDD Histidine phosphatase superfamily, clade-1
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
His_Pase_superF_clade-1 Pfam Histidine phosphatase superfamily, clade-1

GOSlim

21 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
RNA binding Blast molecular function
GTPase activator activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
mitochondrion Blast cellular component
protein dephosphorylation Blast biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
dephosphorylation Blast biological process
nuclear speck Blast cellular component
hydrolase activity Blast molecular function
identical protein binding Blast molecular function
macromolecular complex binding Blast molecular function
nucleolus Blast cellular component
nuclear part Blast cellular component
macromolecular complex Blast cellular component
whole membrane Blast cellular component
mitochondrial membrane Blast cellular component
bounding membrane of organelle Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
fibrillar center Hs cellular component 210 3.17e-66
nucleic acid binding Hs molecular function 211 6.98e-66
RNA binding Hs molecular function 211 6.98e-66
phosphoprotein phosphatase activity Hs molecular function 159 1.09e-45
protein serine/threonine phosphatase activity Hs molecular function 159 1.09e-45
GTPase activator activity Hs molecular function 159 1.09e-45
protein binding Hs molecular function 211 6.98e-66
nucleus Hs cellular component 211 6.98e-66
nucleoplasm Hs cellular component 211 6.98e-66
spliceosomal complex Hs cellular component 211 6.98e-66
U1 snRNP Hs cellular component 211 6.98e-66
U2 snRNP Hs cellular component 210 3.17e-66
mitochondrion Hs cellular component 159 1.09e-45
mitochondrial outer membrane Hs cellular component 159 1.09e-45
signal transducer, downstream of receptor, with serine/threonine phosphatase activity Hs molecular function 159 1.09e-45
membrane Hs cellular component 159 1.09e-45
integral component of membrane Hs cellular component 159 1.09e-45
nuclear speck Hs cellular component 210 3.17e-66
hydrolase activity Hs molecular function 159 1.09e-45
phosphatase activity Hs molecular function 159 1.09e-45
intracellular ribonucleoprotein complex Hs cellular component 211 6.98e-66
small nuclear ribonucleoprotein complex Hs cellular component 210 3.17e-66
U1 snRNA binding Hs molecular function 211 6.98e-66
snRNA stem-loop binding Hs molecular function 211 6.98e-66
identical protein binding Hs molecular function 211 6.98e-66
macromolecular complex binding Hs molecular function 159 1.09e-45
snRNP binding Hs molecular function 210 3.17e-66
U2-type catalytic step 2 spliceosome Hs cellular component 210 3.17e-66
catalytic step 2 spliceosome Hs cellular component 210 3.17e-66
U1 snRNP binding Hs molecular function 211 6.98e-66

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 1.02E-19