Aniseed - Gene card

Gene Card

Best human hits

EIF3M; PSMD13

Species

P.mammillata

Unique Gene ID

Phmamm.g00004033

Gene Model ID

Phmamm.CG.MTP2014.S139.g04033

Location

S139:118510..123654

Transcript Models and Sequences

Phmamm.CG.MTP2014.S139.g04033.01.t
Phmamm.CG.MTP2014.S139.g04033.02.t
Phmamm.CG.MTP2014.S139.g04033.03.t
Phmamm.CG.MTP2014.S139.g04033.04.t
Phmamm.CG.MTP2014.S139.g04033.05.t
Phmamm.CG.MTP2014.S139.g04033.06.t
Phmamm.CG.MTP2014.S139.g04033.07.t
Phmamm.CG.MTP2014.S139.g04033.08.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

58 results

AHC0AAA92YP04

Plate: Plate_92_P04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
eIF3m	Hamap	Eukaryotic translation initiation factor 3 subunit M
PCI_dom	ProSiteProfiles	Proteasome component (PCI) domain
PCI_dom	Pfam	Proteasome component (PCI) domain
WH_DNA-bd_sf	SUPERFAMILY	Winged helix DNA-binding domain superfamily
PCI_dom	SMART	Proteasome component (PCI) domain

GOSlim

20 results

GO Term	Annotation Origin	Type
structural molecule activity	Blast	molecular function
binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular region	Blast	cellular component
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
translational initiation	Orthology	biological process
membrane	Blast	cellular component
extracellular exosome	Blast	cellular component
RNA binding	Orthology	molecular function
regulation of gene expression	Orthology	biological process
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular part	Blast	cellular component
intracellular organelle part	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
endomembrane system	Blast	cellular component
intracellular organelle lumen	Blast	cellular component

GO (Orthology)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
cytoplasmic translational initiation	Hs	biological process
translation initiation factor activity	Hs	molecular function
binding	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
eukaryotic translation initiation factor 3 complex	Hs	cellular component
translation	Hs	biological process
translational initiation	Hs	biological process
translation initiation factor binding	Hs	molecular function
eukaryotic translation initiation factor 3 complex, eIF3m	Hs	cellular component

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
proteasome complex	Hs	cellular component	49.7	1.36e-06
translation initiation factor activity	Hs	molecular function	335	1.53e-113
structural molecule activity	Hs	molecular function	49.7	1.36e-06
binding	Hs	molecular function	335	1.53e-113
protein binding	Hs	molecular function	335	1.53e-113
extracellular region	Hs	cellular component	49.7	1.36e-06
nucleus	Hs	cellular component	49.7	1.36e-06
nucleoplasm	Hs	cellular component	49.7	1.36e-06
cytoplasm	Hs	cellular component	335	1.53e-113
cytosol	Hs	cellular component	335	1.53e-113
proteasome regulatory particle	Hs	cellular component	49.7	1.36e-06
eukaryotic translation initiation factor 3 complex	Hs	cellular component	335	1.53e-113
proteasome regulatory particle, lid subcomplex	Hs	cellular component	49.7	1.36e-06
membrane	Hs	cellular component	49.7	1.36e-06
proteasome accessory complex	Hs	cellular component	49.7	1.36e-06
translation initiation factor binding	Hs	molecular function	335	1.53e-113
secretory granule lumen	Hs	cellular component	49.7	1.36e-06
extracellular exosome	Hs	cellular component	49.7	1.36e-06
eukaryotic translation initiation factor 3 complex, eIF3m	Hs	cellular component	335	1.53e-113
ficolin-1-rich granule lumen	Hs	cellular component	49.7	1.36e-06

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
translation initiation factor activity	Hamap	molecular function	18.469
protein binding	SMART	molecular function	9.8E-15
cytoplasm	Hamap	cellular component	18.469
eukaryotic translation initiation factor 3 complex	Hamap	cellular component	18.469