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GENE CARD

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Gene Card

Best human hits

HDGFL2; HDGFL3; PSIP1

Species

P.mammillata

Unique Gene ID

Phmamm.g00004253

Gene Model ID

Phmamm.CG.MTP2014.S150.g04253

Location

S150:171393..172776

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S150.g04253.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

14 results

AHC0AAA11YM14

Plate: Plate_11_M14

AHC0AAA2YD17

Plate: Plate_2_D17

AHC0AAA38YN03

Plate: Plate_38_N03

AHC0AAA54YN07

Plate: Plate_54_N07

AHC0AAA76YJ05

Plate: Plate_76_J05

AHC0AAA77YD05

Plate: Plate_77_D05

AHC0AAA111YG05

Plate: Plate_111_G05

AHC0AAA115YM20

Plate: Plate_115_M20

AHC0AAA135YJ20

Plate: Plate_135_J20

AHC0AAA160YL12

Plate: Plate_160_L12

AHC0AAA181YM19

Plate: Plate_181_M19

AHC0AAA217YA21

Plate: Plate_217_A21

AHC0AAA38YN01

Plate: Plate_38_N01

AHC0AAA54YN05

Plate: Plate_54_N05

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
PWWP_dom SMART PWWP domain
HIVI-bd_sf SUPERFAMILY HIV integrase-binding domain superfamily
TFIIS/LEDGF_dom_sf Gene3D TFIIS/LEDGF domain superfamily
LEDGF_IBD Pfam Lens epithelium-derived growth factor, integrase-binding domain
PWWP_dom Pfam PWWP domain
PWWP_dom ProSiteProfiles PWWP domain

GOSlim

25 results

GO Term Annotation Origin Type
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
extracellular region Blast cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Blast cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
response to oxidative stress Orthology biological process
microtubule binding Blast molecular function
tubulin binding Blast molecular function
mRNA splicing, via spliceosome Orthology biological process
response to stress Orthology biological process
cellular component organization Orthology biological process
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
intracellular transport Orthology biological process
double-stranded DNA binding Orthology molecular function
receptor binding Blast molecular function
molecular function regulator Blast molecular function
regulation of signal transduction Blast biological process
signaling receptor activity Blast molecular function

GO (Orthology)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
mRNA 5'-splice site recognition Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
response to oxidative stress Hs biological process
response to heat Hs biological process
viral process Hs biological process
positive regulation of cell growth Hs biological process
transcriptionally active chromatin Hs cellular component
nuclear transport Hs biological process
supercoiled DNA binding Hs molecular function

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
DNA binding Hs molecular function 136 7.23e-35
chromatin binding Hs molecular function 129 4.26e-32
RNA binding Hs molecular function 136 7.23e-35
protein binding Hs molecular function 136 7.23e-35
extracellular region Hs cellular component 139 8.32e-39
nucleus Hs cellular component 139 8.32e-39
nucleoplasm Hs cellular component 139 8.32e-39
cytoplasm Hs cellular component 139 8.32e-39
cytosol Hs cellular component 139 8.32e-39
microtubule binding Hs molecular function 139 8.32e-39
growth factor activity Hs molecular function 139 8.32e-39
tubulin binding Hs molecular function 139 8.32e-39
transcriptionally active chromatin Hs cellular component 136 7.23e-35
supercoiled DNA binding Hs molecular function 136 7.23e-35

GO (InterProScan)

No result

GO Term Analysis Type e-value