Aniseed - Gene card

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Genoscope Yasuo Villefranche

48 results

AHC0AAA98YO23

Plate: Plate_98_O23

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
KH_dom_type_1_sf	SUPERFAMILY	K Homology domain, type 1 superfamily
KH_dom_type_1	Pfam	K Homology domain, type 1
KH_dom	SMART	K Homology domain
KH_dom_type_1_sf	Gene3D	K Homology domain, type 1 superfamily
FUBP_C	Pfam	Far upstream element-binding protein, C-terminal

GOSlim

27 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
membrane	Orthology	cellular component
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA splicing, via transesterification reactions	Orthology	biological process
cytosol	Orthology	cellular component
mRNA processing	Orthology	biological process
mRNA catabolic process	Orthology	biological process
RNA splicing	Orthology	biological process
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
RNA metabolic process	Orthology	biological process
organic substance transport	Orthology	biological process

GO (Orthology)

32 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
positive regulation of gene expression	Hs	biological process
membrane	Hs	cellular component
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
exosome (RNase complex)	Hs	cellular component
RNA splicing, via transesterification reactions	Hs	biological process
mRNA binding	Hs	molecular function
cytosol	Hs	cellular component
mRNA processing	Hs	biological process
mRNA catabolic process	Hs	biological process
RNA splicing	Hs	biological process
cytoplasmic stress granule	Hs	cellular component
miRNA metabolic process	Hs	biological process
mRNA 3'-UTR AU-rich region binding	Hs	molecular function
regulation of mRNA stability	Hs	biological process
mRNA transport	Hs	biological process
positive regulation of mRNA catabolic process	Hs	biological process
3'-UTR-mediated mRNA destabilization	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	218	6.73e-63
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	218	6.73e-63
nucleic acid binding	Hs	molecular function	218	6.73e-63
DNA binding	Hs	molecular function	218	6.73e-63
single-stranded DNA binding	Hs	molecular function	202	2.06e-56
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	202	2.06e-56
RNA binding	Hs	molecular function	218	6.73e-63
protein binding	Hs	molecular function	218	6.73e-63
nucleus	Hs	cellular component	218	6.73e-63
nucleoplasm	Hs	cellular component	202	2.06e-56
cytoplasm	Hs	cellular component	218	6.73e-63
membrane	Hs	cellular component	218	6.73e-63

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	1.2E-15
RNA binding	Gene3D	molecular function	7.4E-24
regulation of transcription, DNA-templated	Pfam	biological process	3.2E-5

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