Gene Card
Best human hits
LEMD3; RBM23; RBM39
Species
Unique Gene ID
Phmamm.g00005059
Gene Model ID
Phmamm.CG.MTP2014.S191.g05059
Location
S191:12796..14206
Transcript Models and Sequences
Genoscope Yasuo Villefranche
59 results
AHC0AAA13YL14
Plate: Plate_13_L14
AHC0AAA14YE24
Plate: Plate_14_E24
AHC0AAA20YL19
Plate: Plate_20_L19
AHC0AAA24YM19
Plate: Plate_24_M19
AHC0AAA28YC07
Plate: Plate_28_C07
AHC0AAA32YA14
Plate: Plate_32_A14
AHC0AAA39YE12
Plate: Plate_39_E12
AHC0AAA41YD23
Plate: Plate_41_D23
AHC0AAA48YI21
Plate: Plate_48_I21
AHC0AAA52YA16
Plate: Plate_52_A16
AHC0AAA53YL03
Plate: Plate_53_L03
AHC0AAA60YJ22
Plate: Plate_60_J22
AHC0AAA61YL16
Plate: Plate_61_L16
AHC0AAA64YO14
Plate: Plate_64_O14
AHC0AAA68YC18
Plate: Plate_68_C18
AHC0AAA71YI03
Plate: Plate_71_I03
AHC0AAA79YK12
Plate: Plate_79_K12
AHC0AAA80YD23
Plate: Plate_80_D23
AHC0AAA106YO21
Plate: Plate_106_O21
AHC0AAA115YE18
Plate: Plate_115_E18
AHC0AAA122YN04
Plate: Plate_122_N04
AHC0AAA132YJ14
Plate: Plate_132_J14
AHC0AAA137YM06
Plate: Plate_137_M06
AHC0AAA141YA14
Plate: Plate_141_A14
AHC0AAA145YD06
Plate: Plate_145_D06
AHC0AAA154YK17
Plate: Plate_154_K17
AHC0AAA156YJ03
Plate: Plate_156_J03
AHC0AAA156YM08
Plate: Plate_156_M08
AHC0AAA84YF18
Plate: Plate_84_F18
AHC0AAA87YG20
Plate: Plate_87_G20
AHC0AAA93YO20
Plate: Plate_93_O20
AHC0AAA94YF11
Plate: Plate_94_F11
AHC0AAA96YK09
Plate: Plate_96_K09
AHC0AAA99YA17
Plate: Plate_99_A17
AHC0AAA159YE09
Plate: Plate_159_E09
AHC0AAA160YN14
Plate: Plate_160_N14
AHC0AAA166YH15
Plate: Plate_166_H15
AHC0AAA167YB07
Plate: Plate_167_B07
AHC0AAA167YO06
Plate: Plate_167_O06
AHC0AAA173YA06
Plate: Plate_173_A06
AHC0AAA180YF01
Plate: Plate_180_F01
AHC0AAA184YA07
Plate: Plate_184_A07
AHC0AAA184YB17
Plate: Plate_184_B17
AHC0AAA186YE22
Plate: Plate_186_E22
AHC0AAA205YE16
Plate: Plate_205_E16
AHC0AAA207YL11
Plate: Plate_207_L11
AHC0AAA219YB01
Plate: Plate_219_B01
AHC0AAA223YB23
Plate: Plate_223_B23
AHC0AAA235YM11
Plate: Plate_235_M11
AHC0AAA236YP07
Plate: Plate_236_P07
AHC0AAA241YG19
Plate: Plate_241_G19
AHC0AAA242YH07
Plate: Plate_242_H07
AHC0AAA250YO06
Plate: Plate_250_O06
AHC0AAA254YB24
Plate: Plate_254_B24
AHC0AAA254YK12
Plate: Plate_254_K12
AHC0AAA256YH14
Plate: Plate_256_H14
AHC0AAA257YO04
Plate: Plate_257_O04
AHC0AAA269YN07
Plate: Plate_269_N07
AHC0AAA39YE10
Plate: Plate_39_E10
n/a
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InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| RBM39_SF | TIGRFAM | Splicing factor, RBM39-like |
| RRM_dom | SMART | RNA recognition motif domain |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| RBM39_linker | Pfam | Splicing factor RBM39, linker |
| RRM_dom | Pfam | RNA recognition motif domain |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
GOSlim
16 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleic acid binding | Blast | molecular function |
| DNA binding | Blast | molecular function |
| RNA binding | Blast | molecular function |
| protein binding | Blast | molecular function |
| nucleus | Blast | cellular component |
| nucleoplasm | Blast | cellular component |
| microtubule organizing center | Blast | cellular component |
| mRNA processing | InterProScan | biological process |
| microtubule cytoskeleton | Blast | cellular component |
| membrane | Blast | cellular component |
| integral component of membrane | Blast | cellular component |
| nuclear speck | Blast | cellular component |
| nuclear membrane | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
| organelle inner membrane | Blast | cellular component |
| chromatin binding | Blast | molecular function |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
16 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 489 | 1.59e-170 |
| DNA binding | Hs | molecular function | 97.8 | 1.94e-21 |
| RNA binding | Hs | molecular function | 489 | 1.59e-170 |
| protein binding | Hs | molecular function | 489 | 1.59e-170 |
| nucleus | Hs | cellular component | 489 | 1.59e-170 |
| nuclear inner membrane | Hs | cellular component | 97.8 | 1.94e-21 |
| integral component of nuclear inner membrane | Hs | cellular component | 97.8 | 1.94e-21 |
| nucleoplasm | Hs | cellular component | 489 | 1.59e-170 |
| microtubule organizing center | Hs | cellular component | 489 | 1.59e-170 |
| microtubule cytoskeleton | Hs | cellular component | 489 | 1.59e-170 |
| membrane | Hs | cellular component | 328 | 2.26e-108 |
| integral component of membrane | Hs | cellular component | 97.8 | 1.94e-21 |
| nuclear speck | Hs | cellular component | 489 | 1.59e-170 |
| chromatin DNA binding | Hs | molecular function | 97.8 | 1.94e-21 |
| nuclear membrane | Hs | cellular component | 97.8 | 1.94e-21 |
| macromolecular complex | Hs | cellular component | 489 | 1.59e-170 |
GO (InterProScan)
4 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 1.49E-31 |
| RNA binding | TIGRFAM | molecular function | 3.3E-143 |
| nucleus | TIGRFAM | cellular component | 3.3E-143 |
| mRNA processing | TIGRFAM | biological process | 3.3E-143 |
