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GENE CARD

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  1. Species 'Ciona intestinalis'

Gene Card

Best human hits

P3H3; P4HA1; P4HA2

Species

P.mammillata

Unique Gene ID

Phmamm.g00005524

Gene Model ID

Phmamm.CG.MTP2014.S215.g05524

Location

S215:122913..130471

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

21 results

AHC0AAA35YK05

Plate: Plate_35_K05

AHC0AAA38YO04

Plate: Plate_38_O04

AHC0AAA44YA15

Plate: Plate_44_A15

AHC0AAA106YN08

Plate: Plate_106_N08

AHC0AAA113YA19

Plate: Plate_113_A19

AHC0AAA132YG24

Plate: Plate_132_G24

AHC0AAA141YJ15

Plate: Plate_141_J15

AHC0AAA81YI03

Plate: Plate_81_I03

AHC0AAA91YL07

Plate: Plate_91_L07

AHC0AAA93YI21

Plate: Plate_93_I21

AHC0AAA95YN09

Plate: Plate_95_N09

AHC0AAA106YN06

Plate: Plate_106_N06

AHC0AAA163YB18

Plate: Plate_163_B18

AHC0AAA164YO18

Plate: Plate_164_O18

AHC0AAA168YI02

Plate: Plate_168_I02

AHC0AAA169YK24

Plate: Plate_169_K24

AHC0AAA170YH01

Plate: Plate_170_H01

AHC0AAA195YP19

Plate: Plate_195_P19

AHC0AAA201YE20

Plate: Plate_201_E20

AHC0AAA210YM04

Plate: Plate_210_M04

AHC0AAA38YO02

Plate: Plate_38_O02

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Oxoglu/Fe-dep_dioxygenase Pfam Oxoglutarate/iron-dependent dioxygenase
Pro_4_hyd_alph SMART Prolyl 4-hydroxylase, alpha subunit
Oxoglu/Fe-dep_dioxygenase ProSiteProfiles Oxoglutarate/iron-dependent dioxygenase

GOSlim

20 results

GO Term Annotation Origin Type
iron ion binding Blast molecular function
protein binding Blast molecular function
nucleoplasm Blast cellular component
mitochondrion Blast cellular component
endoplasmic reticulum Blast cellular component
endoplasmic reticulum lumen Blast cellular component
cytosol Blast cellular component
membrane Blast cellular component
identical protein binding Blast molecular function
intracellular membrane-bounded organelle Blast cellular component
metal ion binding Blast molecular function
oxidation-reduction process Blast biological process
catalytic activity Blast molecular function
cellular protein modification process Blast biological process
macromolecular complex Blast cellular component
cellular metabolic process Blast biological process
endoplasmic reticulum part Blast cellular component
small molecule binding Blast molecular function
anion binding Blast molecular function
coenzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
procollagen-proline 4-dioxygenase activity Hs molecular function 81.3 1.94e-16
iron ion binding Hs molecular function 81.3 1.94e-16
protein binding Hs molecular function 81.3 1.94e-16
collagen trimer Hs cellular component 81.3 1.94e-16
nucleoplasm Hs cellular component 78.2 2.11e-15
mitochondrion Hs cellular component 81.3 1.94e-16
endoplasmic reticulum Hs cellular component 81.3 1.94e-16
endoplasmic reticulum lumen Hs cellular component 81.3 1.94e-16
cytosol Hs cellular component 78.2 2.11e-15
electron carrier activity Hs molecular function 78.2 2.11e-15
membrane Hs cellular component 81.3 1.94e-16
procollagen-proline 4-dioxygenase complex Hs cellular component 81.3 1.94e-16
oxidoreductase activity Hs molecular function 81.3 1.94e-16
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Hs molecular function 81.3 1.94e-16
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Hs molecular function 81.3 1.94e-16
procollagen-proline 3-dioxygenase activity Hs molecular function 40.4 0.002
L-ascorbic acid binding Hs molecular function 81.3 1.94e-16
identical protein binding Hs molecular function 81.3 1.94e-16
intracellular membrane-bounded organelle Hs cellular component 81.3 1.94e-16
metal ion binding Hs molecular function 81.3 1.94e-16
dioxygenase activity Hs molecular function 81.3 1.94e-16
catalytic complex Hs cellular component 40.4 0.002

GO (InterProScan)

5 results

GO Term Analysis Type e-value
iron ion binding SMART molecular function 1.3E-13
oxidoreductase activity Pfam molecular function 3.5E-13
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SMART molecular function 1.3E-13
L-ascorbic acid binding SMART molecular function 1.3E-13
oxidation-reduction process SMART biological process 1.3E-13