Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

DDX23; DDX3Y; DDX41

Species

P.mammillata

Unique Gene ID

Phmamm.g00005966

Gene Model ID

Phmamm.CG.MTP2014.S240.g05966

Location

S240:139660..154575

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

20 results

AHC0AAA38YL21

Plate: Plate_38_L21

AHC0AAA63YE06

Plate: Plate_63_E06

AHC0AAA70YL12

Plate: Plate_70_L12

AHC0AAA105YO02

Plate: Plate_105_O02

AHC0AAA114YB24

Plate: Plate_114_B24

AHC0AAA128YA20

Plate: Plate_128_A20

AHC0AAA128YH12

Plate: Plate_128_H12

AHC0AAA94YA05

Plate: Plate_94_A05

AHC0AAA98YD20

Plate: Plate_98_D20

AHC0AAA99YK17

Plate: Plate_99_K17

AHC0AAA176YI03

Plate: Plate_176_I03

AHC0AAA192YG14

Plate: Plate_192_G14

AHC0AAA211YI02

Plate: Plate_211_I02

AHC0AAA214YO19

Plate: Plate_214_O19

AHC0AAA223YF11

Plate: Plate_223_F11

AHC0AAA253YL23

Plate: Plate_253_L23

AHC0AAA257YG12

Plate: Plate_257_G12

AHC0AAA264YE14

Plate: Plate_264_E14

AHC0AAA38YN23

Plate: Plate_38_N23

AHC0AAA98YD18

Plate: Plate_98_D18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C ProSiteProfiles Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C CDD Helicase, C-terminal
Helicase_C SMART Helicase, C-terminal
Helicase_C Pfam Helicase, C-terminal

GOSlim

31 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
endoplasmic reticulum Orthology cellular component
cytosol Orthology cellular component
mRNA processing Orthology biological process
apoptotic process Orthology biological process
cell proliferation Orthology biological process
RNA splicing Orthology biological process
membrane Orthology cellular component
hydrolase activity Orthology molecular function
cell differentiation Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
extracellular exosome Blast cellular component
nucleoside-triphosphatase activity Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
RNA metabolic process Orthology biological process
immune system process Orthology biological process
defense response Orthology biological process
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
spliceosomal complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
cytosol Hs cellular component
mRNA processing Hs biological process
apoptotic process Hs biological process
cell proliferation Hs biological process
RNA splicing Hs biological process
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
hydrolase activity Hs molecular function
cell differentiation Hs biological process
positive regulation of type I interferon production Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
defense response to virus Hs biological process
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 794 0.0
nucleic acid binding Hs molecular function 794 0.0
DNA binding Hs molecular function 794 0.0
RNA binding Hs molecular function 794 0.0
ATP-dependent RNA helicase activity Hs molecular function 794 0.0
helicase activity Hs molecular function 794 0.0
protein binding Hs molecular function 794 0.0
ATP binding Hs molecular function 794 0.0
nucleus Hs cellular component 794 0.0
nucleoplasm Hs cellular component 305 1.50e-93
spliceosomal complex Hs cellular component 794 0.0
U5 snRNP Hs cellular component 305 1.50e-93
nucleolus Hs cellular component 794 0.0
cytoplasm Hs cellular component 794 0.0
endoplasmic reticulum Hs cellular component 794 0.0
cytosol Hs cellular component 794 0.0
membrane Hs cellular component 794 0.0
hydrolase activity Hs molecular function 794 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 294 1.20e-90
metal ion binding Hs molecular function 794 0.0
extracellular exosome Hs cellular component 305 1.50e-93
catalytic step 2 spliceosome Hs cellular component 794 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.0E-44
ATP binding Pfam molecular function 1.0E-44