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GENE CARD

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Gene Card

Best human hits

GTF2A1; TAF9

Species

P.mammillata

Unique Gene ID

Phmamm.g00006313

Gene Model ID

Phmamm.CG.MTP2014.S262.g06313

Location

S262:124903..127505

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S262.g06313.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

57 results

AHC0AAA15YO08

Plate: Plate_15_O08

AHC0AAA21YL18

Plate: Plate_21_L18

AHC0AAA23YJ23

Plate: Plate_23_J23

AHC0AAA36YK03

Plate: Plate_36_K03

AHC0AAA37YE05

Plate: Plate_37_E05

AHC0AAA45YD19

Plate: Plate_45_D19

AHC0AAA45YE03

Plate: Plate_45_E03

AHC0AAA45YP21

Plate: Plate_45_P21

AHC0AAA52YE22

Plate: Plate_52_E22

AHC0AAA55YI10

Plate: Plate_55_I10

AHC0AAA59YJ03

Plate: Plate_59_J03

AHC0AAA67YC11

Plate: Plate_67_C11

AHC0AAA67YL12

Plate: Plate_67_L12

AHC0AAA74YB09

Plate: Plate_74_B09

AHC0AAA74YD16

Plate: Plate_74_D16

AHC0AAA76YL21

Plate: Plate_76_L21

AHC0AAA102YA16

Plate: Plate_102_A16

AHC0AAA103YI14

Plate: Plate_103_I14

AHC0AAA104YA13

Plate: Plate_104_A13

AHC0AAA115YE11

Plate: Plate_115_E11

AHC0AAA127YI08

Plate: Plate_127_I08

AHC0AAA129YK20

Plate: Plate_129_K20

AHC0AAA137YD24

Plate: Plate_137_D24

AHC0AAA138YO22

Plate: Plate_138_O22

AHC0AAA147YM17

Plate: Plate_147_M17

AHC0AAA150YF20

Plate: Plate_150_F20

AHC0AAA85YD06

Plate: Plate_85_D06

AHC0AAA89YL07

Plate: Plate_89_L07

AHC0AAA93YA09

Plate: Plate_93_A09

AHC0AAA147YO19

Plate: Plate_147_O19

AHC0AAA162YO12

Plate: Plate_162_O12

AHC0AAA169YB05

Plate: Plate_169_B05

AHC0AAA171YL20

Plate: Plate_171_L20

AHC0AAA174YF10

Plate: Plate_174_F10

AHC0AAA175YK20

Plate: Plate_175_K20

AHC0AAA177YL01

Plate: Plate_177_L01

AHC0AAA186YD06

Plate: Plate_186_D06

AHC0AAA186YG12

Plate: Plate_186_G12

AHC0AAA195YL03

Plate: Plate_195_L03

AHC0AAA203YH07

Plate: Plate_203_H07

AHC0AAA204YA13

Plate: Plate_204_A13

AHC0AAA205YP08

Plate: Plate_205_P08

AHC0AAA206YM22

Plate: Plate_206_M22

AHC0AAA215YH07

Plate: Plate_215_H07

AHC0AAA221YF07

Plate: Plate_221_F07

AHC0AAA223YM03

Plate: Plate_223_M03

AHC0AAA225YJ24

Plate: Plate_225_J24

AHC0AAA229YJ02

Plate: Plate_229_J02

AHC0AAA236YO03

Plate: Plate_236_O03

AHC0AAA242YN20

Plate: Plate_242_N20

AHC0AAA253YD02

Plate: Plate_253_D02

AHC0AAA256YG17

Plate: Plate_256_G17

AHC0AAA257YJ05

Plate: Plate_257_J05

AHC0AAA258YN06

Plate: Plate_258_N06

AHC0AAA259YC13

Plate: Plate_259_C13

AHC0AAA259YC14

Plate: Plate_259_C14

AHC0AAA55YK12

Plate: Plate_55_K12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
TFIIA_asu/bsu SMART Transcription factor IIA, alpha/beta subunit
TFIID-31 CDD Transcription initiation factor TAFII31
Histone-fold Gene3D Histone-fold
TFIIA_b-brl SUPERFAMILY Transcription factor IIA, beta-barrel
Histone-fold SUPERFAMILY Histone-fold
TFIID-31 Pfam Transcription initiation factor TAFII31
TFIIA_b-brl Gene3D Transcription factor IIA, beta-barrel
TFIIA_asu/bsu PANTHER Transcription factor IIA, alpha/beta subunit
TFIIA_asu/bsu Pfam Transcription factor IIA, alpha/beta subunit

GOSlim

21 results

GO Term Annotation Origin Type
DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
DNA-templated transcription, initiation InterProScan biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
transcription factor binding Orthology molecular function
transcription regulatory region DNA binding Blast molecular function
protein heterodimerization activity Orthology molecular function
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
organelle organization Blast biological process
transferase activity Blast molecular function
cellular protein modification process Blast biological process
enzyme binding Blast molecular function

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
RNA polymerase II repressing transcription factor binding Hs molecular function
DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor TFIID complex Hs cellular component
transcription factor TFIIA complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
transcription factor binding Hs molecular function
TBP-class protein binding Hs molecular function
snRNA transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
SAGA complex Hs cellular component 109 3.94e-27
PCAF complex Hs cellular component 109 3.94e-27
transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly Hs molecular function 109 3.94e-27
RNA polymerase II repressing transcription factor binding Hs molecular function 108 5.95e-26
p53 binding Hs molecular function 109 3.94e-27
DNA binding Hs molecular function 109 3.94e-27
transcription coactivator activity Hs molecular function 109 3.94e-27
histone acetyltransferase activity Hs molecular function 109 3.94e-27
protein binding Hs molecular function 109 3.94e-27
nucleus Hs cellular component 109 3.94e-27
nucleoplasm Hs cellular component 109 3.94e-27
transcription factor TFIID complex Hs cellular component 109 3.94e-27
transcription factor TFIIA complex Hs cellular component 108 5.95e-26
cytoplasm Hs cellular component 108 5.95e-26
cytosol Hs cellular component 108 5.95e-26
transcription factor binding Hs molecular function 108 5.95e-26
TBP-class protein binding Hs molecular function 108 5.95e-26
STAGA complex Hs cellular component 109 3.94e-27
transcription factor TFTC complex Hs cellular component 109 3.94e-27
activating transcription factor binding Hs molecular function 109 3.94e-27
transcription regulatory region DNA binding Hs molecular function 109 3.94e-27
protein heterodimerization activity Hs molecular function 109 3.94e-27
ATPase binding Hs molecular function 109 3.94e-27
C2H2 zinc finger domain binding Hs molecular function 109 3.94e-27
pre-snoRNP complex Hs cellular component 109 3.94e-27
MLL1 complex Hs cellular component 109 3.94e-27

GO (InterProScan)

4 results

GO Term Analysis Type e-value
transcription factor TFIIA complex SMART cellular component 3.2E-85
DNA-templated transcription, initiation CDD biological process 4.51086E-42
transcription initiation from RNA polymerase II promoter SMART biological process 3.2E-85
protein heterodimerization activity Gene3D molecular function 3.9E-27