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GENE CARD

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Gene Card

Best human hits

AP002373.1; RBM11; RBM7

Species

P.mammillata

Unique Gene ID

Phmamm.g00007485

Gene Model ID

Phmamm.CG.MTP2014.S338.g07485

Location

S338:96024..96684

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S338.g07485.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

64 results

AHC0AAA11YL16

Plate: Plate_11_L16

AHC0AAA11YM17

Plate: Plate_11_M17

AHC0AAA14YH08

Plate: Plate_14_H08

AHC0AAA16YF18

Plate: Plate_16_F18

AHC0AAA24YK21

Plate: Plate_24_K21

AHC0AAA24YL23

Plate: Plate_24_L23

AHC0AAA3YK08

Plate: Plate_3_K08

AHC0AAA5YA09

Plate: Plate_5_A09

AHC0AAA5YG10

Plate: Plate_5_G10

AHC0AAA7YA14

Plate: Plate_7_A14

AHC0AAA7YE02

Plate: Plate_7_E02

AHC0AAA33YI13

Plate: Plate_33_I13

AHC0AAA34YL01

Plate: Plate_34_L01

AHC0AAA35YF09

Plate: Plate_35_F09

AHC0AAA37YI19

Plate: Plate_37_I19

AHC0AAA38YL13

Plate: Plate_38_L13

AHC0AAA40YK10

Plate: Plate_40_K10

AHC0AAA41YE13

Plate: Plate_41_E13

AHC0AAA43YE13

Plate: Plate_43_E13

AHC0AAA44YG14

Plate: Plate_44_G14

AHC0AAA52YA19

Plate: Plate_52_A19

AHC0AAA52YC19

Plate: Plate_52_C19

AHC0AAA65YL09

Plate: Plate_65_L09

AHC0AAA67YI07

Plate: Plate_67_I07

AHC0AAA69YM09

Plate: Plate_69_M09

AHC0AAA70YD04

Plate: Plate_70_D04

AHC0AAA71YN18

Plate: Plate_71_N18

AHC0AAA72YG02

Plate: Plate_72_G02

AHC0AAA74YB22

Plate: Plate_74_B22

AHC0AAA74YI05

Plate: Plate_74_I05

AHC0AAA75YG23

Plate: Plate_75_G23

AHC0AAA101YE08

Plate: Plate_101_E08

AHC0AAA103YP10

Plate: Plate_103_P10

AHC0AAA113YI18

Plate: Plate_113_I18

AHC0AAA113YO15

Plate: Plate_113_O15

AHC0AAA121YM07

Plate: Plate_121_M07

AHC0AAA123YN13

Plate: Plate_123_N13

AHC0AAA129YK16

Plate: Plate_129_K16

AHC0AAA130YP11

Plate: Plate_130_P11

AHC0AAA131YC06

Plate: Plate_131_C06

AHC0AAA133YG18

Plate: Plate_133_G18

AHC0AAA140YK19

Plate: Plate_140_K19

AHC0AAA149YJ19

Plate: Plate_149_J19

AHC0AAA151YC07

Plate: Plate_151_C07

AHC0AAA151YO21

Plate: Plate_151_O21

AHC0AAA84YE04

Plate: Plate_84_E04

AHC0AAA91YA15

Plate: Plate_91_A15

AHC0AAA92YG23

Plate: Plate_92_G23

AHC0AAA133YI20

Plate: Plate_133_I20

AHC0AAA178YM16

Plate: Plate_178_M16

AHC0AAA183YN19

Plate: Plate_183_N19

AHC0AAA186YF14

Plate: Plate_186_F14

AHC0AAA190YL20

Plate: Plate_190_L20

AHC0AAA198YK21

Plate: Plate_198_K21

AHC0AAA204YF16

Plate: Plate_204_F16

AHC0AAA210YD10

Plate: Plate_210_D10

AHC0AAA219YJ09

Plate: Plate_219_J09

AHC0AAA225YG20

Plate: Plate_225_G20

AHC0AAA225YO05

Plate: Plate_225_O05

AHC0AAA250YD04

Plate: Plate_250_D04

AHC0AAA259YP17

Plate: Plate_259_P17

AHC0AAA268YF20

Plate: Plate_268_F20

AHC0AAA38YN15

Plate: Plate_38_N15

AHC0AAA92YG21

Plate: Plate_92_G21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom Pfam RNA recognition motif domain
RRM_dom ProSiteProfiles RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom SMART RNA recognition motif domain

GOSlim

16 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
mRNA processing Orthology biological process
multicellular organism development Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
cell differentiation Orthology biological process
protein homodimerization activity Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
regulation of gene expression Orthology biological process
cellular response to stress Orthology biological process
response to oxidative stress Orthology biological process
reproductive process Orthology biological process

GO (Orthology)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
regulation of alternative mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
single-stranded RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
mRNA processing Hs biological process
multicellular organism development Hs biological process
poly(U) RNA binding Hs molecular function
RNA splicing Hs biological process
nuclear speck Hs cellular component
cell differentiation Hs biological process
cellular response to oxidative stress Hs biological process
protein homodimerization activity Hs molecular function
meiotic cell cycle Hs biological process

GO (Blast)

9 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 103 7.40e-27
RNA binding Hs molecular function 103 7.40e-27
single-stranded RNA binding Hs molecular function 103 7.40e-27
protein binding Hs molecular function 103 7.40e-27
nucleus Hs cellular component 103 7.40e-27
nucleoplasm Hs cellular component 103 7.40e-27
poly(U) RNA binding Hs molecular function 95.1 1.42e-23
nuclear speck Hs cellular component 95.1 1.42e-23
protein homodimerization activity Hs molecular function 95.1 1.42e-23

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 3.63E-25