Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

SMARCB1

Species

P.mammillata

Unique Gene ID

Phmamm.g00010215

Gene Model ID

Phmamm.CG.MTP2014.S576.g10215

Location

S576:68485..74616

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

24 results

AHC0AAA23YL07

Plate: Plate_23_L07

AHC0AAA26YE09

Plate: Plate_26_E09

AHC0AAA7YA11

Plate: Plate_7_A11

AHC0AAA29YN11

Plate: Plate_29_N11

AHC0AAA45YG19

Plate: Plate_45_G19

AHC0AAA52YG21

Plate: Plate_52_G21

AHC0AAA71YO22

Plate: Plate_71_O22

AHC0AAA100YC20

Plate: Plate_100_C20

AHC0AAA103YP19

Plate: Plate_103_P19

AHC0AAA110YJ07

Plate: Plate_110_J07

AHC0AAA122YD05

Plate: Plate_122_D05

AHC0AAA134YA14

Plate: Plate_134_A14

AHC0AAA139YH03

Plate: Plate_139_H03

AHC0AAA87YL21

Plate: Plate_87_L21

AHC0AAA94YH01

Plate: Plate_94_H01

AHC0AAA98YI06

Plate: Plate_98_I06

AHC0AAA165YK19

Plate: Plate_165_K19

AHC0AAA167YM12

Plate: Plate_167_M12

AHC0AAA178YE15

Plate: Plate_178_E15

AHC0AAA183YD12

Plate: Plate_183_D12

AHC0AAA192YC08

Plate: Plate_192_C08

AHC0AAA201YO17

Plate: Plate_201_O17

AHC0AAA241YO06

Plate: Plate_241_O06

AHC0AAA98YK08

Plate: Plate_98_K08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
SNF5 PANTHER SNF5/SMARCB1/INI1
SNF5 Pfam SNF5/SMARCB1/INI1
Sfh1/SNF5 PIRSF Chromatin-remodeling complex component Sfh1/SNF5

GOSlim

31 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
DNA repair Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
cell cycle Orthology biological process
nervous system development Orthology biological process
negative regulation of cell proliferation Orthology biological process
cell differentiation Orthology biological process
macromolecular complex Orthology cellular component
intracellular membrane-bounded organelle Orthology cellular component
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
DNA-templated transcription, initiation Orthology biological process
transcription regulatory region sequence-specific DNA binding Orthology molecular function
organelle organization Orthology biological process
DNA metabolic process Orthology biological process
transcription factor binding Orthology molecular function
chromatin binding Orthology molecular function
macromolecular complex binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
neuron part Orthology cellular component
positive regulation of transcription, DNA-templated Orthology biological process

GO (Orthology)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nuclear chromosome Hs cellular component
nuclear chromatin Hs cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
RNA polymerase I CORE element sequence-specific DNA binding Hs molecular function
RNA polymerase I transcriptional preinitiation complex assembly Hs biological process
fibrillar center Hs cellular component
XY body Hs cellular component
p53 binding Hs molecular function
DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
DNA repair Hs biological process
chromatin organization Hs biological process
nucleosome disassembly Hs biological process
chromatin remodeling Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
cell cycle Hs biological process
nervous system development Hs biological process
negative regulation of cell proliferation Hs biological process
DNA integration Hs biological process
viral process Hs biological process
SWI/SNF complex Hs cellular component
cell differentiation Hs biological process
Tat protein binding Hs molecular function
nucleosomal DNA binding Hs molecular function
macromolecular complex Hs cellular component
ATP-dependent chromatin remodeling Hs biological process
intracellular membrane-bounded organelle Hs cellular component
positive regulation of transcription from RNA polymerase II promoter Hs biological process
positive regulation of sequence-specific DNA binding transcription factor activity Hs biological process
npBAF complex Hs cellular component
nBAF complex Hs cellular component
positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nuclear chromosome Hs cellular component 553 0.0
nuclear chromatin Hs cellular component 553 0.0
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 553 0.0
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 553 0.0
RNA polymerase I CORE element sequence-specific DNA binding Hs molecular function 553 0.0
fibrillar center Hs cellular component 553 0.0
XY body Hs cellular component 553 0.0
p53 binding Hs molecular function 553 0.0
DNA binding Hs molecular function 553 0.0
transcription coactivator activity Hs molecular function 553 0.0
protein binding Hs molecular function 553 0.0
nucleus Hs cellular component 553 0.0
nucleoplasm Hs cellular component 553 0.0
nucleolus Hs cellular component 553 0.0
SWI/SNF complex Hs cellular component 553 0.0
Tat protein binding Hs molecular function 553 0.0
nucleosomal DNA binding Hs molecular function 553 0.0
macromolecular complex Hs cellular component 553 0.0
intracellular membrane-bounded organelle Hs cellular component 553 0.0
npBAF complex Hs cellular component 553 0.0
nBAF complex Hs cellular component 553 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nuclear chromosome PANTHER cellular component 8.4E-109
chromatin remodeling PIRSF biological process 2.9E-140