Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

CDKN2AIPNL; GPATCH2; NKRF

Species

P.mammillata

Unique Gene ID

Phmamm.g00010757

Gene Model ID

Phmamm.CG.MTP2014.S633.g10757

Location

S633:19267..28018

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

41 results

AHC0AAA2YO23

Plate: Plate_2_O23

AHC0AAA5YL17

Plate: Plate_5_L17

AHC0AAA6YB03

Plate: Plate_6_B03

AHC0AAA41YI11

Plate: Plate_41_I11

AHC0AAA43YC18

Plate: Plate_43_C18

AHC0AAA47YN17

Plate: Plate_47_N17

AHC0AAA50YO08

Plate: Plate_50_O08

AHC0AAA50YP03

Plate: Plate_50_P03

AHC0AAA54YL21

Plate: Plate_54_L21

AHC0AAA62YG07

Plate: Plate_62_G07

AHC0AAA68YE13

Plate: Plate_68_E13

AHC0AAA74YE02

Plate: Plate_74_E02

AHC0AAA110YP03

Plate: Plate_110_P03

AHC0AAA110YP18

Plate: Plate_110_P18

AHC0AAA123YC08

Plate: Plate_123_C08

AHC0AAA134YL04

Plate: Plate_134_L04

AHC0AAA141YB02

Plate: Plate_141_B02

AHC0AAA142YP05

Plate: Plate_142_P05

AHC0AAA143YP12

Plate: Plate_143_P12

AHC0AAA145YO19

Plate: Plate_145_O19

AHC0AAA149YL06

Plate: Plate_149_L06

AHC0AAA86YH13

Plate: Plate_86_H13

AHC0AAA86YP16

Plate: Plate_86_P16

AHC0AAA87YE15

Plate: Plate_87_E15

AHC0AAA87YH02

Plate: Plate_87_H02

AHC0AAA161YG19

Plate: Plate_161_G19

AHC0AAA169YD10

Plate: Plate_169_D10

AHC0AAA170YP21

Plate: Plate_170_P21

AHC0AAA177YN20

Plate: Plate_177_N20

AHC0AAA181YM09

Plate: Plate_181_M09

AHC0AAA183YP01

Plate: Plate_183_P01

AHC0AAA196YJ16

Plate: Plate_196_J16

AHC0AAA210YC04

Plate: Plate_210_C04

AHC0AAA211YA05

Plate: Plate_211_A05

AHC0AAA227YM22

Plate: Plate_227_M22

AHC0AAA230YI06

Plate: Plate_230_I06

AHC0AAA237YD09

Plate: Plate_237_D09

AHC0AAA241YE04

Plate: Plate_241_E04

AHC0AAA259YF13

Plate: Plate_259_F13

AHC0AAA265YL17

Plate: Plate_265_L17

AHC0AAA54YN23

Plate: Plate_54_N23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
R3H_dom Pfam R3H domain
XTBD_dom_prot PANTHER XTBD domain-containing protein
XTBD Pfam XRN2-binding (XTBD) domain
R3H_dom_sf SUPERFAMILY R3H domain superfamily
G_patch_dom SMART G-patch domain
XTBD ProSiteProfiles XRN2-binding (XTBD) domain
G_patch_dom Pfam G-patch domain
R3H_dom ProSiteProfiles R3H domain
G_patch_dom ProSiteProfiles G-patch domain
R3H_dom SMART R3H domain
dsRBD_dom ProSiteProfiles Double-stranded RNA-binding domain
R3H_dom_sf Gene3D R3H domain superfamily

GOSlim

15 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
signal transduction Orthology biological process
nuclear speck Blast cellular component
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process

GO (Orthology)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
signal transduction Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 149 9.55e-38
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 149 9.55e-38
nucleic acid binding Hs molecular function 149 9.55e-38
DNA binding Hs molecular function 149 9.55e-38
RNA binding Hs molecular function 149 9.55e-38
protein binding Hs molecular function 149 9.55e-38
nucleus Hs cellular component 149 9.55e-38
nucleoplasm Hs cellular component 47.8 1.15e-06
nucleolus Hs cellular component 149 9.55e-38
nuclear speck Hs cellular component 48.1 1.43e-05

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding Gene3D molecular function 1.9E-17