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GENE CARD

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Gene Card

Best human hits

CCDC6; CCDC88C; SYCP1

Species

P.mammillata

Unique Gene ID

Phmamm.g00011280

Gene Model ID

Phmamm.CG.MTP2014.S694.g11280

Location

S694:44485..46547

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S694.g11280.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

8 results

AHC0AAA20YI14

Plate: Plate_20_I14

AHC0AAA3YF19

Plate: Plate_3_F19

AHC0AAA9YN12

Plate: Plate_9_N12

AHC0AAA127YO21

Plate: Plate_127_O21

AHC0AAA129YI10

Plate: Plate_129_I10

AHC0AAA92YG12

Plate: Plate_92_G12

AHC0AAA237YM05

Plate: Plate_237_M05

AHC0AAA92YG10

Plate: Plate_92_G10

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
DUF2046 PANTHER Protein of unknown function DUF2046
DUF2046 Pfam Protein of unknown function DUF2046

GOSlim

13 results

GO Term Annotation Origin Type
DNA binding Blast molecular function
protein binding Orthology molecular function
nucleus Blast cellular component
cytoplasm Orthology cellular component
centrosome Blast cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
microtubule binding Blast molecular function
organelle organization Orthology biological process
structural molecule activity Orthology molecular function
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component

GO (Orthology)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
structural constituent of cytoskeleton Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
cytoskeleton organization Hs biological process
SH3 domain binding Hs molecular function

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
chromosome, centromeric region Hs cellular component 40.0 0.003
condensed nuclear chromosome Hs cellular component 40.0 0.003
synaptonemal complex Hs cellular component 40.0 0.003
central element Hs cellular component 40.0 0.003
transverse filament Hs cellular component 40.0 0.003
male germ cell nucleus Hs cellular component 40.0 0.003
DNA binding Hs molecular function 40.0 0.003
structural constituent of cytoskeleton Hs molecular function 374 3.47e-126
protein binding Hs molecular function 374 3.47e-126
nucleus Hs cellular component 40.0 0.003
chromosome Hs cellular component 40.0 0.003
cytoplasm Hs cellular component 374 3.47e-126
centrosome Hs cellular component 41.6 0.001
cytosol Hs cellular component 374 3.47e-126
cytoskeleton Hs cellular component 374 3.47e-126
microtubule binding Hs molecular function 41.6 0.001
SH3 domain binding Hs molecular function 374 3.47e-126
PDZ domain binding Hs molecular function 41.6 0.001
protein self-association Hs molecular function 41.6 0.001
dynein light intermediate chain binding Hs molecular function 41.6 0.001

GO (InterProScan)

No result

GO Term Analysis Type e-value